Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3862

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3861 and Pf1N1B4_3862 are separated by 144 nucleotidesPf1N1B4_3862 and Pf1N1B4_3863 are separated by 67 nucleotidesPf1N1B4_3863 and Pf1N1B4_3864 are separated by 460 nucleotides Pf1N1B4_3861 - FIG00953368: hypothetical protein, at 4,289,995 to 4,290,738 _3861 Pf1N1B4_3862 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 4,290,883 to 4,292,970 _3862 Pf1N1B4_3863 - FIG000557: hypothetical protein co-occurring with RecR, at 4,293,038 to 4,293,376 _3863 Pf1N1B4_3864 - Recombination protein RecR, at 4,293,837 to 4,294,439 _3864 Position (kb) 4290 4291 4292 4293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4289.909 kb on + strandat 4289.920 kb on + strandat 4290.018 kb on - strandat 4290.111 kb on + strand, within Pf1N1B4_3861at 4290.111 kb on + strand, within Pf1N1B4_3861at 4290.112 kb on - strand, within Pf1N1B4_3861at 4290.112 kb on - strand, within Pf1N1B4_3861at 4290.112 kb on - strand, within Pf1N1B4_3861at 4290.112 kb on - strandat 4290.113 kb on + strand, within Pf1N1B4_3861at 4290.114 kb on - strandat 4290.114 kb on - strandat 4290.114 kb on - strand, within Pf1N1B4_3861at 4290.114 kb on - strand, within Pf1N1B4_3861at 4290.114 kb on - strand, within Pf1N1B4_3861at 4290.145 kb on + strand, within Pf1N1B4_3861at 4290.218 kb on + strand, within Pf1N1B4_3861at 4290.218 kb on + strand, within Pf1N1B4_3861at 4290.321 kb on - strand, within Pf1N1B4_3861at 4290.324 kb on + strand, within Pf1N1B4_3861at 4290.324 kb on + strandat 4290.325 kb on - strandat 4290.325 kb on - strandat 4290.325 kb on - strand, within Pf1N1B4_3861at 4290.325 kb on - strand, within Pf1N1B4_3861at 4290.327 kb on - strandat 4290.327 kb on - strandat 4290.327 kb on - strand, within Pf1N1B4_3861at 4290.443 kb on + strand, within Pf1N1B4_3861at 4290.443 kb on + strand, within Pf1N1B4_3861at 4290.771 kb on + strandat 4292.971 kb on + strandat 4292.971 kb on + strandat 4292.971 kb on + strandat 4292.971 kb on + strandat 4293.019 kb on + strandat 4293.019 kb on + strandat 4293.456 kb on - strandat 4293.646 kb on + strandat 4293.646 kb on + strandat 4293.649 kb on + strandat 4293.649 kb on + strandat 4293.760 kb on + strandat 4293.760 kb on + strandat 4293.761 kb on - strandat 4293.773 kb on + strandat 4293.799 kb on + strandat 4293.801 kb on + strandat 4293.819 kb on + strandat 4293.819 kb on + strandat 4293.819 kb on + strandat 4293.819 kb on + strandat 4293.820 kb on - strandat 4293.820 kb on - strandat 4293.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,289,909 + +0.8
4,289,920 + -0.2
4,290,018 - -1.8
4,290,111 + Pf1N1B4_3861 0.16 -0.2
4,290,111 + Pf1N1B4_3861 0.16 -1.8
4,290,112 - Pf1N1B4_3861 0.16 +1.4
4,290,112 - Pf1N1B4_3861 0.16 +1.1
4,290,112 - Pf1N1B4_3861 0.16 -1.8
4,290,112 - -1.2
4,290,113 + Pf1N1B4_3861 0.16 +0.8
4,290,114 - +2.1
4,290,114 - -0.2
4,290,114 - Pf1N1B4_3861 0.16 -0.2
4,290,114 - Pf1N1B4_3861 0.16 +0.9
4,290,114 - Pf1N1B4_3861 0.16 -1.2
4,290,145 + Pf1N1B4_3861 0.20 -0.5
4,290,218 + Pf1N1B4_3861 0.30 -0.2
4,290,218 + Pf1N1B4_3861 0.30 -1.2
4,290,321 - Pf1N1B4_3861 0.44 -1.8
4,290,324 + Pf1N1B4_3861 0.44 -2.0
4,290,324 + -1.2
4,290,325 - +0.4
4,290,325 - -1.2
4,290,325 - Pf1N1B4_3861 0.44 +1.8
4,290,325 - Pf1N1B4_3861 0.44 -1.2
4,290,327 - -1.2
4,290,327 - +0.8
4,290,327 - Pf1N1B4_3861 0.45 +0.1
4,290,443 + Pf1N1B4_3861 0.60 -1.8
4,290,443 + Pf1N1B4_3861 0.60 +1.8
4,290,771 + -2.2
4,292,971 + +0.2
4,292,971 + -0.6
4,292,971 + +0.5
4,292,971 + -1.2
4,293,019 + +0.9
4,293,019 + +0.3
4,293,456 - +1.1
4,293,646 + -1.0
4,293,646 + -2.2
4,293,649 + -0.2
4,293,649 + +1.7
4,293,760 + +1.8
4,293,760 + -1.5
4,293,761 - -2.8
4,293,773 + -0.2
4,293,799 + +0.3
4,293,801 + +0.5
4,293,819 + -0.8
4,293,819 + +3.0
4,293,819 + -0.2
4,293,819 + +0.6
4,293,820 - -4.1
4,293,820 - -3.4
4,293,820 - -2.5

Or see this region's nucleotide sequence