Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3782

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3781 and Pf1N1B4_3782 are separated by 160 nucleotidesPf1N1B4_3782 and Pf1N1B4_3783 are separated by 235 nucleotidesPf1N1B4_3783 and Pf1N1B4_3784 are separated by 354 nucleotides Pf1N1B4_3781 - Nucleoside:H+ symporter:Major facilitator superfamily, at 4,190,320 to 4,191,465 _3781 Pf1N1B4_3782 - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54), at 4,191,626 to 4,192,171 _3782 Pf1N1B4_3783 - FIG00958237: hypothetical protein, at 4,192,407 to 4,192,685 _3783 Pf1N1B4_3784 - Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,193,040 to 4,194,878 _3784 Position (kb) 4191 4192 4193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4190.781 kb on + strand, within Pf1N1B4_3781at 4190.782 kb on - strand, within Pf1N1B4_3781at 4190.794 kb on + strand, within Pf1N1B4_3781at 4190.794 kb on + strand, within Pf1N1B4_3781at 4190.795 kb on - strand, within Pf1N1B4_3781at 4190.935 kb on + strand, within Pf1N1B4_3781at 4190.935 kb on + strand, within Pf1N1B4_3781at 4190.936 kb on - strandat 4190.936 kb on - strand, within Pf1N1B4_3781at 4190.936 kb on - strand, within Pf1N1B4_3781at 4190.974 kb on + strand, within Pf1N1B4_3781at 4190.974 kb on + strand, within Pf1N1B4_3781at 4190.974 kb on + strandat 4190.974 kb on + strandat 4190.975 kb on - strand, within Pf1N1B4_3781at 4190.975 kb on - strand, within Pf1N1B4_3781at 4190.977 kb on + strand, within Pf1N1B4_3781at 4190.977 kb on + strand, within Pf1N1B4_3781at 4190.977 kb on + strand, within Pf1N1B4_3781at 4190.977 kb on + strandat 4190.977 kb on + strand, within Pf1N1B4_3781at 4190.978 kb on - strand, within Pf1N1B4_3781at 4190.978 kb on - strand, within Pf1N1B4_3781at 4191.033 kb on + strandat 4191.065 kb on + strand, within Pf1N1B4_3781at 4191.066 kb on - strand, within Pf1N1B4_3781at 4191.066 kb on - strand, within Pf1N1B4_3781at 4191.066 kb on - strand, within Pf1N1B4_3781at 4191.066 kb on - strand, within Pf1N1B4_3781at 4191.066 kb on - strand, within Pf1N1B4_3781at 4191.068 kb on + strand, within Pf1N1B4_3781at 4191.267 kb on + strand, within Pf1N1B4_3781at 4191.267 kb on + strand, within Pf1N1B4_3781at 4191.267 kb on + strandat 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strandat 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.307 kb on + strand, within Pf1N1B4_3781at 4191.308 kb on - strand, within Pf1N1B4_3781at 4191.349 kb on + strand, within Pf1N1B4_3781at 4191.394 kb on - strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.444 kb on + strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.445 kb on - strandat 4191.572 kb on + strandat 4191.597 kb on - strandat 4191.666 kb on + strandat 4191.666 kb on + strandat 4191.936 kb on + strand, within Pf1N1B4_3782at 4191.937 kb on - strand, within Pf1N1B4_3782at 4191.986 kb on + strand, within Pf1N1B4_3782at 4191.986 kb on + strand, within Pf1N1B4_3782at 4191.986 kb on + strandat 4191.987 kb on - strand, within Pf1N1B4_3782at 4192.120 kb on + strandat 4192.120 kb on + strandat 4192.121 kb on - strandat 4192.174 kb on - strandat 4192.174 kb on - strandat 4192.207 kb on + strandat 4192.208 kb on - strandat 4192.208 kb on - strandat 4192.216 kb on + strandat 4192.217 kb on - strandat 4192.217 kb on - strandat 4192.217 kb on - strandat 4192.217 kb on - strandat 4192.217 kb on - strandat 4192.217 kb on - strandat 4192.224 kb on - strandat 4192.309 kb on + strandat 4192.309 kb on + strandat 4192.309 kb on + strandat 4192.309 kb on + strandat 4192.309 kb on + strandat 4192.309 kb on + strandat 4192.309 kb on + strandat 4192.378 kb on + strandat 4192.379 kb on - strandat 4192.387 kb on + strandat 4192.388 kb on - strandat 4192.388 kb on - strandat 4192.388 kb on - strandat 4192.388 kb on - strandat 4192.388 kb on - strandat 4192.391 kb on + strandat 4192.391 kb on + strandat 4192.392 kb on - strandat 4192.392 kb on - strandat 4192.394 kb on - strandat 4192.394 kb on - strandat 4192.394 kb on - strandat 4192.394 kb on - strandat 4192.420 kb on + strandat 4192.420 kb on + strandat 4192.420 kb on + strandat 4192.420 kb on + strandat 4192.420 kb on + strandat 4192.420 kb on + strandat 4192.421 kb on - strandat 4192.504 kb on - strand, within Pf1N1B4_3783at 4192.504 kb on - strand, within Pf1N1B4_3783at 4192.553 kb on - strand, within Pf1N1B4_3783at 4192.653 kb on + strand, within Pf1N1B4_3783at 4192.962 kb on + strandat 4192.962 kb on + strandat 4192.984 kb on + strandat 4192.984 kb on + strandat 4192.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,190,781 + Pf1N1B4_3781 0.40 -1.3
4,190,782 - Pf1N1B4_3781 0.40 +1.8
4,190,794 + Pf1N1B4_3781 0.41 -1.8
4,190,794 + Pf1N1B4_3781 0.41 +1.9
4,190,795 - Pf1N1B4_3781 0.41 +1.2
4,190,935 + Pf1N1B4_3781 0.54 +0.8
4,190,935 + Pf1N1B4_3781 0.54 -1.5
4,190,936 - -0.6
4,190,936 - Pf1N1B4_3781 0.54 -2.0
4,190,936 - Pf1N1B4_3781 0.54 -0.5
4,190,974 + Pf1N1B4_3781 0.57 -1.5
4,190,974 + Pf1N1B4_3781 0.57 -0.3
4,190,974 + +0.1
4,190,974 + -0.2
4,190,975 - Pf1N1B4_3781 0.57 +0.4
4,190,975 - Pf1N1B4_3781 0.57 -2.2
4,190,977 + Pf1N1B4_3781 0.57 -0.9
4,190,977 + Pf1N1B4_3781 0.57 +1.9
4,190,977 + Pf1N1B4_3781 0.57 -1.2
4,190,977 + +0.2
4,190,977 + Pf1N1B4_3781 0.57 -0.5
4,190,978 - Pf1N1B4_3781 0.57 -2.2
4,190,978 - Pf1N1B4_3781 0.57 +0.5
4,191,033 + +0.8
4,191,065 + Pf1N1B4_3781 0.65 +0.8
4,191,066 - Pf1N1B4_3781 0.65 -0.2
4,191,066 - Pf1N1B4_3781 0.65 -1.8
4,191,066 - Pf1N1B4_3781 0.65 -0.2
4,191,066 - Pf1N1B4_3781 0.65 +0.2
4,191,066 - Pf1N1B4_3781 0.65 -1.8
4,191,068 + Pf1N1B4_3781 0.65 +0.3
4,191,267 + Pf1N1B4_3781 0.83 -0.2
4,191,267 + Pf1N1B4_3781 0.83 +0.7
4,191,267 + -1.8
4,191,307 + Pf1N1B4_3781 0.86 -1.8
4,191,307 + Pf1N1B4_3781 0.86 +0.2
4,191,307 + Pf1N1B4_3781 0.86 +0.8
4,191,307 + -0.2
4,191,307 + Pf1N1B4_3781 0.86 +0.3
4,191,307 + Pf1N1B4_3781 0.86 +0.9
4,191,307 + Pf1N1B4_3781 0.86 +1.2
4,191,307 + Pf1N1B4_3781 0.86 +0.8
4,191,307 + Pf1N1B4_3781 0.86 -2.8
4,191,307 + Pf1N1B4_3781 0.86 -0.8
4,191,307 + Pf1N1B4_3781 0.86 +1.4
4,191,307 + Pf1N1B4_3781 0.86 +0.0
4,191,307 + Pf1N1B4_3781 0.86 +2.4
4,191,307 + Pf1N1B4_3781 0.86 +0.4
4,191,307 + Pf1N1B4_3781 0.86 -0.3
4,191,307 + Pf1N1B4_3781 0.86 +1.0
4,191,307 + Pf1N1B4_3781 0.86 +0.1
4,191,308 - Pf1N1B4_3781 0.86 -1.8
4,191,349 + Pf1N1B4_3781 0.90 -0.2
4,191,394 - -1.5
4,191,444 + -0.2
4,191,444 + +1.0
4,191,444 + +0.2
4,191,444 + -1.2
4,191,444 + +0.2
4,191,444 + +0.1
4,191,444 + -3.0
4,191,444 + -1.2
4,191,444 + -1.5
4,191,445 - +0.5
4,191,445 - -0.3
4,191,445 - +0.2
4,191,445 - -1.5
4,191,445 - -0.8
4,191,445 - +0.4
4,191,445 - -1.2
4,191,445 - +0.8
4,191,572 + +1.8
4,191,597 - +0.5
4,191,666 + -2.2
4,191,666 + -1.1
4,191,936 + Pf1N1B4_3782 0.57 +0.8
4,191,937 - Pf1N1B4_3782 0.57 -0.5
4,191,986 + Pf1N1B4_3782 0.66 -1.2
4,191,986 + Pf1N1B4_3782 0.66 -1.9
4,191,986 + +0.4
4,191,987 - Pf1N1B4_3782 0.66 -2.2
4,192,120 + +0.8
4,192,120 + +1.0
4,192,121 - -0.9
4,192,174 - +1.4
4,192,174 - -0.9
4,192,207 + +1.4
4,192,208 - -0.2
4,192,208 - -0.2
4,192,216 + -1.2
4,192,217 - -2.2
4,192,217 - -0.2
4,192,217 - -2.5
4,192,217 - -1.4
4,192,217 - -1.2
4,192,217 - +0.5
4,192,224 - +0.2
4,192,309 + -1.5
4,192,309 + -2.8
4,192,309 + -0.8
4,192,309 + -0.2
4,192,309 + +0.5
4,192,309 + +0.8
4,192,309 + +0.8
4,192,378 + +0.8
4,192,379 - -0.2
4,192,387 + +0.4
4,192,388 - +0.2
4,192,388 - -0.2
4,192,388 - -3.0
4,192,388 - -1.2
4,192,388 - -2.2
4,192,391 + -0.2
4,192,391 + +1.4
4,192,392 - -1.2
4,192,392 - -2.2
4,192,394 - -0.9
4,192,394 - +0.8
4,192,394 - -0.2
4,192,394 - -0.5
4,192,420 + +2.1
4,192,420 + -0.2
4,192,420 + +0.6
4,192,420 + -2.2
4,192,420 + -0.8
4,192,420 + -1.2
4,192,421 - -0.5
4,192,504 - Pf1N1B4_3783 0.35 +2.8
4,192,504 - Pf1N1B4_3783 0.35 +0.2
4,192,553 - Pf1N1B4_3783 0.52 +2.0
4,192,653 + Pf1N1B4_3783 0.88 -0.2
4,192,962 + +0.1
4,192,962 + +1.4
4,192,984 + -1.2
4,192,984 + -0.8
4,192,985 - -0.9

Or see this region's nucleotide sequence