Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3403

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3402 and Pf1N1B4_3403 are separated by 275 nucleotidesPf1N1B4_3403 and Pf1N1B4_3404 are separated by 111 nucleotidesPf1N1B4_3404 and Pf1N1B4_3405 overlap by 4 nucleotides Pf1N1B4_3402 - Magnesium and cobalt transport protein CorA, at 3,793,995 to 3,795,017 _3402 Pf1N1B4_3403 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 3,795,293 to 3,796,918 _3403 Pf1N1B4_3404 - FIG00953132: hypothetical protein, at 3,797,030 to 3,797,464 _3404 Pf1N1B4_3405 - Signal transduction histidine kinase, at 3,797,461 to 3,798,639 _3405 Position (kb) 3795 3796 3797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3794.963 kb on - strandat 3795.128 kb on - strandat 3795.128 kb on - strandat 3795.128 kb on - strandat 3795.269 kb on - strandat 3795.284 kb on + strandat 3795.410 kb on + strandat 3795.411 kb on - strandat 3795.543 kb on - strand, within Pf1N1B4_3403at 3795.666 kb on + strand, within Pf1N1B4_3403at 3795.667 kb on - strand, within Pf1N1B4_3403at 3795.669 kb on + strandat 3795.669 kb on + strandat 3795.670 kb on - strand, within Pf1N1B4_3403at 3795.670 kb on - strand, within Pf1N1B4_3403at 3795.670 kb on - strand, within Pf1N1B4_3403at 3795.670 kb on - strand, within Pf1N1B4_3403at 3795.670 kb on - strand, within Pf1N1B4_3403at 3795.701 kb on + strand, within Pf1N1B4_3403at 3795.962 kb on + strand, within Pf1N1B4_3403at 3796.550 kb on - strand, within Pf1N1B4_3403at 3797.431 kb on + strandat 3797.431 kb on + strandat 3797.432 kb on - strandat 3797.432 kb on - strandat 3797.432 kb on - strandat 3797.463 kb on - strandat 3797.463 kb on - strandat 3797.564 kb on + strandat 3797.564 kb on + strandat 3797.564 kb on + strandat 3797.565 kb on - strandat 3797.565 kb on - strandat 3797.565 kb on - strandat 3797.565 kb on - strandat 3797.565 kb on - strandat 3797.764 kb on + strand, within Pf1N1B4_3405

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,794,963 - +0.4
3,795,128 - -1.2
3,795,128 - +0.5
3,795,128 - +0.7
3,795,269 - -0.1
3,795,284 + +1.5
3,795,410 + -1.9
3,795,411 - +0.7
3,795,543 - Pf1N1B4_3403 0.15 -0.8
3,795,666 + Pf1N1B4_3403 0.23 -0.3
3,795,667 - Pf1N1B4_3403 0.23 -3.1
3,795,669 + +2.9
3,795,669 + -1.6
3,795,670 - Pf1N1B4_3403 0.23 +0.7
3,795,670 - Pf1N1B4_3403 0.23 -1.6
3,795,670 - Pf1N1B4_3403 0.23 -0.1
3,795,670 - Pf1N1B4_3403 0.23 +0.5
3,795,670 - Pf1N1B4_3403 0.23 -1.1
3,795,701 + Pf1N1B4_3403 0.25 -0.1
3,795,962 + Pf1N1B4_3403 0.41 -0.8
3,796,550 - Pf1N1B4_3403 0.77 -3.2
3,797,431 + -2.5
3,797,431 + +0.7
3,797,432 - +1.5
3,797,432 - +1.3
3,797,432 - +2.3
3,797,463 - -0.6
3,797,463 - -1.7
3,797,564 + -0.3
3,797,564 + -1.1
3,797,564 + -1.1
3,797,565 - -0.1
3,797,565 - -1.1
3,797,565 - -0.7
3,797,565 - +1.2
3,797,565 - +0.7
3,797,764 + Pf1N1B4_3405 0.26 -0.7

Or see this region's nucleotide sequence