Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3074

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3073 and Pf1N1B4_3074 are separated by 282 nucleotidesPf1N1B4_3074 and Pf1N1B4_3075 are separated by 119 nucleotidesPf1N1B4_3075 and Pf1N1B4_3076 overlap by 4 nucleotides Pf1N1B4_3073 - probable glucosyl transferase, at 3,454,364 to 3,456,955 _3073 Pf1N1B4_3074 - HesA/MoeB/ThiF family protein related to EC-YgdL, at 3,457,238 to 3,458,053 _3074 Pf1N1B4_3075 - Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE, at 3,458,173 to 3,458,577 _3075 Pf1N1B4_3076 - Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA, at 3,458,574 to 3,459,779 _3076 Position (kb) 3457 3458 3459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3456.711 kb on + strandat 3456.955 kb on + strandat 3456.955 kb on + strandat 3456.955 kb on + strandat 3456.955 kb on + strandat 3456.955 kb on + strandat 3456.956 kb on - strandat 3456.956 kb on - strandat 3456.956 kb on - strandat 3456.956 kb on - strandat 3456.956 kb on - strandat 3456.959 kb on + strandat 3456.960 kb on - strandat 3456.960 kb on - strandat 3456.960 kb on - strandat 3457.033 kb on + strandat 3457.034 kb on - strandat 3457.034 kb on - strandat 3457.034 kb on - strandat 3457.034 kb on - strandat 3457.101 kb on + strandat 3457.101 kb on + strandat 3457.102 kb on - strandat 3457.102 kb on - strandat 3457.102 kb on - strandat 3457.102 kb on - strandat 3457.102 kb on - strandat 3457.102 kb on - strandat 3457.139 kb on - strandat 3457.146 kb on + strandat 3457.154 kb on + strandat 3457.154 kb on + strandat 3457.154 kb on + strandat 3457.155 kb on - strandat 3457.155 kb on - strandat 3457.155 kb on - strandat 3457.212 kb on + strandat 3457.213 kb on - strandat 3457.213 kb on - strandat 3457.213 kb on - strandat 3457.213 kb on - strandat 3457.215 kb on - strandat 3457.215 kb on - strandat 3457.249 kb on + strandat 3457.286 kb on + strandat 3457.286 kb on + strandat 3457.286 kb on + strandat 3457.287 kb on - strandat 3457.577 kb on + strand, within Pf1N1B4_3074at 3457.578 kb on - strand, within Pf1N1B4_3074at 3457.823 kb on + strand, within Pf1N1B4_3074at 3457.823 kb on + strand, within Pf1N1B4_3074at 3458.200 kb on + strandat 3458.263 kb on - strandat 3458.641 kb on + strandat 3458.641 kb on + strandat 3458.641 kb on + strandat 3458.641 kb on + strandat 3458.642 kb on - strandat 3458.642 kb on - strandat 3458.765 kb on + strand, within Pf1N1B4_3076at 3458.766 kb on - strand, within Pf1N1B4_3076at 3458.857 kb on + strand, within Pf1N1B4_3076at 3458.857 kb on + strand, within Pf1N1B4_3076at 3458.858 kb on - strand, within Pf1N1B4_3076at 3458.858 kb on - strand, within Pf1N1B4_3076at 3458.858 kb on - strand, within Pf1N1B4_3076at 3458.858 kb on - strand, within Pf1N1B4_3076at 3458.858 kb on - strand, within Pf1N1B4_3076at 3459.008 kb on - strand, within Pf1N1B4_3076

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,456,711 + -2.0
3,456,955 + -2.0
3,456,955 + +0.8
3,456,955 + +1.6
3,456,955 + +0.0
3,456,955 + +0.8
3,456,956 - +0.0
3,456,956 - +0.0
3,456,956 - +1.6
3,456,956 - -0.6
3,456,956 - +1.2
3,456,959 + -0.4
3,456,960 - -1.6
3,456,960 - -0.4
3,456,960 - -2.0
3,457,033 + +1.7
3,457,034 - +0.4
3,457,034 - -1.9
3,457,034 - +0.3
3,457,034 - +0.8
3,457,101 + +0.4
3,457,101 + +0.4
3,457,102 - -2.3
3,457,102 - +0.5
3,457,102 - -3.0
3,457,102 - -1.0
3,457,102 - +0.6
3,457,102 - -2.0
3,457,139 - -1.6
3,457,146 + +0.7
3,457,154 + +0.0
3,457,154 + +2.3
3,457,154 + +1.1
3,457,155 - -0.4
3,457,155 - +1.8
3,457,155 - +2.3
3,457,212 + -3.3
3,457,213 - +1.6
3,457,213 - -1.2
3,457,213 - +0.7
3,457,213 - -1.2
3,457,215 - +0.2
3,457,215 - -0.2
3,457,249 + -1.6
3,457,286 + +0.3
3,457,286 + +0.0
3,457,286 + -2.0
3,457,287 - +0.0
3,457,577 + Pf1N1B4_3074 0.42 -0.7
3,457,578 - Pf1N1B4_3074 0.42 -2.8
3,457,823 + Pf1N1B4_3074 0.72 -0.4
3,457,823 + Pf1N1B4_3074 0.72 +0.0
3,458,200 + -1.6
3,458,263 - -1.0
3,458,641 + -0.2
3,458,641 + +0.0
3,458,641 + +0.8
3,458,641 + +0.3
3,458,642 - +0.2
3,458,642 - +0.8
3,458,765 + Pf1N1B4_3076 0.16 +0.3
3,458,766 - Pf1N1B4_3076 0.16 -3.0
3,458,857 + Pf1N1B4_3076 0.23 +0.2
3,458,857 + Pf1N1B4_3076 0.23 +2.6
3,458,858 - Pf1N1B4_3076 0.24 -1.6
3,458,858 - Pf1N1B4_3076 0.24 -1.2
3,458,858 - Pf1N1B4_3076 0.24 +1.3
3,458,858 - Pf1N1B4_3076 0.24 -0.6
3,458,858 - Pf1N1B4_3076 0.24 -1.6
3,459,008 - Pf1N1B4_3076 0.36 +0.0

Or see this region's nucleotide sequence