Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2959

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2957 and Pf1N1B4_2958 overlap by 10 nucleotidesPf1N1B4_2958 and Pf1N1B4_2959 are separated by 334 nucleotidesPf1N1B4_2959 and Pf1N1B4_2960 are separated by 28 nucleotides Pf1N1B4_2957 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 3,310,529 to 3,311,830 _2957 Pf1N1B4_2958 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 3,311,821 to 3,312,210 _2958 Pf1N1B4_2959 - FIG067310: hypothetical protein, at 3,312,545 to 3,314,434 _2959 Pf1N1B4_2960 - FIG002188: hypothetical protein, at 3,314,463 to 3,315,827 _2960 Position (kb) 3312 3313 3314 3315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3311.609 kb on + strand, within Pf1N1B4_2957at 3311.741 kb on + strandat 3311.742 kb on - strandat 3311.742 kb on - strandat 3311.742 kb on - strandat 3311.936 kb on + strand, within Pf1N1B4_2958at 3311.936 kb on + strand, within Pf1N1B4_2958at 3311.936 kb on + strand, within Pf1N1B4_2958at 3311.937 kb on - strandat 3311.937 kb on - strand, within Pf1N1B4_2958at 3312.105 kb on + strand, within Pf1N1B4_2958at 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.189 kb on + strandat 3312.190 kb on - strandat 3312.190 kb on - strandat 3312.190 kb on - strandat 3312.190 kb on - strandat 3312.209 kb on - strandat 3312.383 kb on + strandat 3312.384 kb on - strandat 3312.501 kb on + strandat 3312.507 kb on + strandat 3312.507 kb on + strandat 3312.523 kb on + strandat 3312.523 kb on + strandat 3312.524 kb on - strandat 3312.524 kb on - strandat 3312.524 kb on - strandat 3312.700 kb on + strandat 3313.002 kb on - strand, within Pf1N1B4_2959at 3313.066 kb on + strand, within Pf1N1B4_2959at 3313.067 kb on - strand, within Pf1N1B4_2959at 3313.172 kb on + strand, within Pf1N1B4_2959at 3313.172 kb on + strand, within Pf1N1B4_2959at 3313.172 kb on + strand, within Pf1N1B4_2959at 3313.172 kb on + strand, within Pf1N1B4_2959at 3313.172 kb on + strand, within Pf1N1B4_2959at 3313.173 kb on - strand, within Pf1N1B4_2959at 3313.218 kb on - strand, within Pf1N1B4_2959at 3313.218 kb on - strand, within Pf1N1B4_2959at 3313.218 kb on - strand, within Pf1N1B4_2959at 3313.282 kb on + strand, within Pf1N1B4_2959at 3313.461 kb on - strand, within Pf1N1B4_2959at 3313.461 kb on - strand, within Pf1N1B4_2959at 3313.509 kb on - strand, within Pf1N1B4_2959at 3313.883 kb on - strand, within Pf1N1B4_2959at 3314.199 kb on + strand, within Pf1N1B4_2959at 3314.378 kb on + strandat 3314.432 kb on + strandat 3314.432 kb on + strandat 3314.433 kb on - strandat 3314.433 kb on - strandat 3314.433 kb on - strandat 3314.433 kb on - strandat 3314.433 kb on - strandat 3314.441 kb on + strandat 3314.441 kb on + strandat 3314.441 kb on + strandat 3314.442 kb on - strandat 3314.442 kb on - strandat 3314.462 kb on + strandat 3314.462 kb on + strandat 3314.463 kb on - strandat 3314.463 kb on - strandat 3314.470 kb on + strandat 3314.739 kb on + strand, within Pf1N1B4_2960at 3314.740 kb on - strand, within Pf1N1B4_2960at 3314.812 kb on - strand, within Pf1N1B4_2960at 3314.882 kb on + strand, within Pf1N1B4_2960at 3315.057 kb on + strand, within Pf1N1B4_2960at 3315.057 kb on + strand, within Pf1N1B4_2960at 3315.057 kb on + strand, within Pf1N1B4_2960at 3315.099 kb on + strand, within Pf1N1B4_2960at 3315.100 kb on - strandat 3315.132 kb on + strand, within Pf1N1B4_2960at 3315.132 kb on + strand, within Pf1N1B4_2960at 3315.133 kb on - strand, within Pf1N1B4_2960at 3315.133 kb on - strand, within Pf1N1B4_2960at 3315.133 kb on - strand, within Pf1N1B4_2960at 3315.234 kb on + strand, within Pf1N1B4_2960at 3315.235 kb on - strand, within Pf1N1B4_2960at 3315.235 kb on - strand, within Pf1N1B4_2960at 3315.280 kb on - strand, within Pf1N1B4_2960at 3315.280 kb on - strand, within Pf1N1B4_2960at 3315.280 kb on - strand, within Pf1N1B4_2960at 3315.280 kb on - strand, within Pf1N1B4_2960at 3315.280 kb on - strand, within Pf1N1B4_2960at 3315.280 kb on - strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strandat 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strandat 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.336 kb on + strand, within Pf1N1B4_2960at 3315.337 kb on - strand, within Pf1N1B4_2960at 3315.337 kb on - strandat 3315.337 kb on - strand, within Pf1N1B4_2960at 3315.337 kb on - strand, within Pf1N1B4_2960at 3315.337 kb on - strand, within Pf1N1B4_2960at 3315.337 kb on - strand, within Pf1N1B4_2960at 3315.337 kb on - strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.390 kb on + strand, within Pf1N1B4_2960at 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.391 kb on - strandat 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.391 kb on - strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.408 kb on + strand, within Pf1N1B4_2960at 3315.409 kb on - strand, within Pf1N1B4_2960at 3315.409 kb on - strand, within Pf1N1B4_2960at 3315.409 kb on - strand, within Pf1N1B4_2960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
3,311,609 + Pf1N1B4_2957 0.83 -0.9
3,311,741 + -0.9
3,311,742 - -1.9
3,311,742 - -0.5
3,311,742 - -0.8
3,311,936 + Pf1N1B4_2958 0.29 +0.1
3,311,936 + Pf1N1B4_2958 0.29 -2.2
3,311,936 + Pf1N1B4_2958 0.29 +0.8
3,311,937 - +0.9
3,311,937 - Pf1N1B4_2958 0.30 +2.1
3,312,105 + Pf1N1B4_2958 0.73 +1.8
3,312,189 + -0.2
3,312,189 + +0.8
3,312,189 + +0.1
3,312,189 + +0.1
3,312,189 + -1.0
3,312,189 + +0.8
3,312,189 + +0.7
3,312,189 + -0.9
3,312,190 - -1.5
3,312,190 - +0.8
3,312,190 - +0.1
3,312,190 - +0.5
3,312,209 - +0.7
3,312,383 + -0.2
3,312,384 - -1.9
3,312,501 + -0.2
3,312,507 + +1.1
3,312,507 + +0.7
3,312,523 + -0.6
3,312,523 + +0.4
3,312,524 - -0.9
3,312,524 - +1.1
3,312,524 - -0.4
3,312,700 + +0.7
3,313,002 - Pf1N1B4_2959 0.24 -1.6
3,313,066 + Pf1N1B4_2959 0.28 +1.4
3,313,067 - Pf1N1B4_2959 0.28 -1.9
3,313,172 + Pf1N1B4_2959 0.33 +0.1
3,313,172 + Pf1N1B4_2959 0.33 +0.1
3,313,172 + Pf1N1B4_2959 0.33 -1.7
3,313,172 + Pf1N1B4_2959 0.33 -2.5
3,313,172 + Pf1N1B4_2959 0.33 -1.7
3,313,173 - Pf1N1B4_2959 0.33 +0.1
3,313,218 - Pf1N1B4_2959 0.36 -2.2
3,313,218 - Pf1N1B4_2959 0.36 -2.1
3,313,218 - Pf1N1B4_2959 0.36 -0.2
3,313,282 + Pf1N1B4_2959 0.39 -2.7
3,313,461 - Pf1N1B4_2959 0.48 -1.9
3,313,461 - Pf1N1B4_2959 0.48 -2.2
3,313,509 - Pf1N1B4_2959 0.51 +0.1
3,313,883 - Pf1N1B4_2959 0.71 -0.9
3,314,199 + Pf1N1B4_2959 0.88 -0.9
3,314,378 + -0.9
3,314,432 + +0.1
3,314,432 + -0.5
3,314,433 - -0.2
3,314,433 - +1.7
3,314,433 - +1.1
3,314,433 - +0.2
3,314,433 - +0.4
3,314,441 + -2.2
3,314,441 + +1.4
3,314,441 + -0.9
3,314,442 - -1.5
3,314,442 - +0.1
3,314,462 + -0.9
3,314,462 + +0.1
3,314,463 - +0.6
3,314,463 - -2.5
3,314,470 + -2.5
3,314,739 + Pf1N1B4_2960 0.20 +0.7
3,314,740 - Pf1N1B4_2960 0.20 +3.0
3,314,812 - Pf1N1B4_2960 0.26 -0.5
3,314,882 + Pf1N1B4_2960 0.31 -2.1
3,315,057 + Pf1N1B4_2960 0.44 -0.1
3,315,057 + Pf1N1B4_2960 0.44 -0.9
3,315,057 + Pf1N1B4_2960 0.44 -2.9
3,315,099 + Pf1N1B4_2960 0.47 -2.5
3,315,100 - +1.1
3,315,132 + Pf1N1B4_2960 0.49 -0.9
3,315,132 + Pf1N1B4_2960 0.49 +0.5
3,315,133 - Pf1N1B4_2960 0.49 +2.3
3,315,133 - Pf1N1B4_2960 0.49 -1.5
3,315,133 - Pf1N1B4_2960 0.49 +2.7
3,315,234 + Pf1N1B4_2960 0.56 +0.7
3,315,235 - Pf1N1B4_2960 0.57 -0.7
3,315,235 - Pf1N1B4_2960 0.57 -0.3
3,315,280 - Pf1N1B4_2960 0.60 -0.1
3,315,280 - Pf1N1B4_2960 0.60 +1.7
3,315,280 - Pf1N1B4_2960 0.60 +0.1
3,315,280 - Pf1N1B4_2960 0.60 -2.5
3,315,280 - Pf1N1B4_2960 0.60 -2.7
3,315,280 - Pf1N1B4_2960 0.60 +1.8
3,315,336 + Pf1N1B4_2960 0.64 +0.9
3,315,336 + Pf1N1B4_2960 0.64 +0.1
3,315,336 + Pf1N1B4_2960 0.64 -0.9
3,315,336 + -1.5
3,315,336 + Pf1N1B4_2960 0.64 -0.9
3,315,336 + Pf1N1B4_2960 0.64 -0.2
3,315,336 + Pf1N1B4_2960 0.64 +1.7
3,315,336 + Pf1N1B4_2960 0.64 +0.1
3,315,336 + Pf1N1B4_2960 0.64 -0.7
3,315,336 + -0.9
3,315,336 + Pf1N1B4_2960 0.64 +0.5
3,315,336 + Pf1N1B4_2960 0.64 +1.0
3,315,336 + Pf1N1B4_2960 0.64 -0.9
3,315,337 - Pf1N1B4_2960 0.64 -0.9
3,315,337 - -0.9
3,315,337 - Pf1N1B4_2960 0.64 -1.9
3,315,337 - Pf1N1B4_2960 0.64 -0.3
3,315,337 - Pf1N1B4_2960 0.64 -2.4
3,315,337 - Pf1N1B4_2960 0.64 -0.5
3,315,337 - Pf1N1B4_2960 0.64 +0.5
3,315,390 + Pf1N1B4_2960 0.68 +0.1
3,315,390 + Pf1N1B4_2960 0.68 -0.9
3,315,390 + Pf1N1B4_2960 0.68 -0.4
3,315,390 + Pf1N1B4_2960 0.68 -0.3
3,315,390 + Pf1N1B4_2960 0.68 +1.9
3,315,390 + Pf1N1B4_2960 0.68 +0.5
3,315,390 + Pf1N1B4_2960 0.68 +1.7
3,315,390 + Pf1N1B4_2960 0.68 -0.6
3,315,390 + Pf1N1B4_2960 0.68 +0.7
3,315,390 + Pf1N1B4_2960 0.68 +0.1
3,315,390 + Pf1N1B4_2960 0.68 +0.9
3,315,390 + Pf1N1B4_2960 0.68 +0.4
3,315,391 - Pf1N1B4_2960 0.68 -0.1
3,315,391 - Pf1N1B4_2960 0.68 -1.9
3,315,391 - Pf1N1B4_2960 0.68 +1.1
3,315,391 - Pf1N1B4_2960 0.68 -0.2
3,315,391 - Pf1N1B4_2960 0.68 +0.1
3,315,391 - +0.1
3,315,391 - Pf1N1B4_2960 0.68 -0.9
3,315,391 - Pf1N1B4_2960 0.68 -0.9
3,315,408 + Pf1N1B4_2960 0.69 +0.5
3,315,408 + Pf1N1B4_2960 0.69 -0.3
3,315,408 + Pf1N1B4_2960 0.69 +0.4
3,315,408 + Pf1N1B4_2960 0.69 -0.1
3,315,408 + Pf1N1B4_2960 0.69 +2.0
3,315,408 + Pf1N1B4_2960 0.69 +0.3
3,315,408 + Pf1N1B4_2960 0.69 -2.0
3,315,408 + Pf1N1B4_2960 0.69 -0.4
3,315,409 - Pf1N1B4_2960 0.69 +1.7
3,315,409 - Pf1N1B4_2960 0.69 -0.5
3,315,409 - Pf1N1B4_2960 0.69 +1.7

Or see this region's nucleotide sequence