Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2935

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2933 and Pf1N1B4_2934 are separated by 2 nucleotidesPf1N1B4_2934 and Pf1N1B4_2935 are separated by 176 nucleotidesPf1N1B4_2935 and Pf1N1B4_2936 are separated by 100 nucleotides Pf1N1B4_2933 - Uracil permease, at 3,289,705 to 3,290,979 _2933 Pf1N1B4_2934 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 3,290,982 to 3,291,620 _2934 Pf1N1B4_2935 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,291,797 to 3,292,354 _2935 Pf1N1B4_2936 - Putative sulfate permease, at 3,292,455 to 3,294,176 _2936 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3291.046 kb on + strand, within Pf1N1B4_2934at 3291.046 kb on + strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strandat 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.466 kb on + strand, within Pf1N1B4_2934at 3291.466 kb on + strand, within Pf1N1B4_2934at 3291.467 kb on - strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strandat 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.551 kb on + strand, within Pf1N1B4_2934at 3291.551 kb on + strand, within Pf1N1B4_2934at 3291.551 kb on + strand, within Pf1N1B4_2934at 3291.552 kb on - strandat 3291.552 kb on - strand, within Pf1N1B4_2934at 3291.552 kb on - strand, within Pf1N1B4_2934at 3291.552 kb on - strand, within Pf1N1B4_2934at 3291.569 kb on + strandat 3291.569 kb on + strandat 3291.569 kb on + strandat 3291.582 kb on - strandat 3291.582 kb on - strandat 3291.582 kb on - strandat 3291.657 kb on + strandat 3291.658 kb on - strandat 3291.663 kb on - strandat 3291.667 kb on + strandat 3291.667 kb on + strandat 3291.668 kb on - strandat 3291.685 kb on + strandat 3291.686 kb on - strandat 3291.686 kb on - strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.688 kb on - strandat 3291.688 kb on - strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.694 kb on - strandat 3291.694 kb on - strandat 3291.694 kb on - strandat 3291.694 kb on - strandat 3291.740 kb on + strandat 3291.741 kb on - strandat 3291.741 kb on - strandat 3291.741 kb on - strandat 3291.851 kb on + strandat 3291.852 kb on - strandat 3291.852 kb on - strandat 3291.852 kb on - strandat 3292.010 kb on + strand, within Pf1N1B4_2935at 3292.011 kb on - strand, within Pf1N1B4_2935at 3292.011 kb on - strand, within Pf1N1B4_2935at 3292.136 kb on - strand, within Pf1N1B4_2935at 3292.277 kb on + strand, within Pf1N1B4_2935at 3292.278 kb on - strand, within Pf1N1B4_2935at 3292.301 kb on + strandat 3292.301 kb on + strandat 3292.302 kb on - strandat 3292.302 kb on - strandat 3292.302 kb on - strandat 3292.352 kb on + strandat 3292.352 kb on + strandat 3292.352 kb on + strandat 3292.352 kb on + strandat 3292.352 kb on + strandat 3292.352 kb on + strandat 3292.353 kb on - strandat 3292.353 kb on - strandat 3292.353 kb on - strandat 3292.353 kb on - strandat 3292.353 kb on - strandat 3292.390 kb on + strandat 3292.390 kb on + strandat 3292.391 kb on - strandat 3292.391 kb on - strandat 3292.508 kb on + strandat 3292.508 kb on + strandat 3292.516 kb on + strandat 3292.516 kb on + strandat 3292.517 kb on - strandat 3292.517 kb on - strandat 3292.569 kb on + strandat 3292.619 kb on - strandat 3292.631 kb on + strand, within Pf1N1B4_2936at 3292.725 kb on + strand, within Pf1N1B4_2936at 3292.726 kb on - strand, within Pf1N1B4_2936at 3292.726 kb on - strand, within Pf1N1B4_2936at 3292.770 kb on + strand, within Pf1N1B4_2936at 3292.777 kb on + strand, within Pf1N1B4_2936at 3292.778 kb on - strand, within Pf1N1B4_2936at 3292.799 kb on + strand, within Pf1N1B4_2936at 3292.799 kb on + strand, within Pf1N1B4_2936at 3292.807 kb on - strand, within Pf1N1B4_2936at 3293.066 kb on - strand, within Pf1N1B4_2936at 3293.066 kb on - strand, within Pf1N1B4_2936at 3293.253 kb on - strand, within Pf1N1B4_2936at 3293.350 kb on - strand, within Pf1N1B4_2936at 3293.350 kb on - strand, within Pf1N1B4_2936

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,291,046 + Pf1N1B4_2934 0.10 -0.9
3,291,046 + Pf1N1B4_2934 0.10 -1.2
3,291,047 - Pf1N1B4_2934 0.10 -0.9
3,291,047 - Pf1N1B4_2934 0.10 -0.4
3,291,047 - +1.7
3,291,047 - Pf1N1B4_2934 0.10 +0.8
3,291,047 - Pf1N1B4_2934 0.10 -2.2
3,291,047 - Pf1N1B4_2934 0.10 +0.1
3,291,047 - Pf1N1B4_2934 0.10 +0.1
3,291,085 + Pf1N1B4_2934 0.16 +1.5
3,291,085 + Pf1N1B4_2934 0.16 -0.9
3,291,085 + Pf1N1B4_2934 0.16 -1.2
3,291,085 + Pf1N1B4_2934 0.16 -1.2
3,291,085 + Pf1N1B4_2934 0.16 -0.9
3,291,085 + Pf1N1B4_2934 0.16 -0.9
3,291,085 + Pf1N1B4_2934 0.16 +0.5
3,291,085 + Pf1N1B4_2934 0.16 -0.3
3,291,085 + Pf1N1B4_2934 0.16 -1.3
3,291,085 + Pf1N1B4_2934 0.16 -0.9
3,291,086 - Pf1N1B4_2934 0.16 -1.3
3,291,086 - Pf1N1B4_2934 0.16 -0.2
3,291,086 - Pf1N1B4_2934 0.16 -0.9
3,291,086 - Pf1N1B4_2934 0.16 -0.3
3,291,086 - Pf1N1B4_2934 0.16 +1.5
3,291,086 - Pf1N1B4_2934 0.16 +0.1
3,291,086 - Pf1N1B4_2934 0.16 -1.5
3,291,086 - Pf1N1B4_2934 0.16 -0.6
3,291,283 + Pf1N1B4_2934 0.47 -2.2
3,291,283 + Pf1N1B4_2934 0.47 -0.9
3,291,283 + Pf1N1B4_2934 0.47 -0.7
3,291,283 + Pf1N1B4_2934 0.47 -1.3
3,291,283 + Pf1N1B4_2934 0.47 -0.9
3,291,283 + Pf1N1B4_2934 0.47 +0.5
3,291,283 + Pf1N1B4_2934 0.47 -1.5
3,291,283 + Pf1N1B4_2934 0.47 +0.1
3,291,283 + Pf1N1B4_2934 0.47 -0.2
3,291,284 - Pf1N1B4_2934 0.47 -2.2
3,291,284 - Pf1N1B4_2934 0.47 -2.5
3,291,284 - Pf1N1B4_2934 0.47 +1.1
3,291,284 - Pf1N1B4_2934 0.47 -1.5
3,291,284 - Pf1N1B4_2934 0.47 +1.4
3,291,284 - Pf1N1B4_2934 0.47 -1.9
3,291,284 - Pf1N1B4_2934 0.47 -2.2
3,291,284 - Pf1N1B4_2934 0.47 -0.9
3,291,284 - Pf1N1B4_2934 0.47 +0.5
3,291,284 - Pf1N1B4_2934 0.47 -0.5
3,291,284 - Pf1N1B4_2934 0.47 -1.3
3,291,284 - Pf1N1B4_2934 0.47 -0.8
3,291,284 - Pf1N1B4_2934 0.47 -1.2
3,291,284 - Pf1N1B4_2934 0.47 +0.1
3,291,284 - Pf1N1B4_2934 0.47 -0.9
3,291,284 - Pf1N1B4_2934 0.47 -1.7
3,291,284 - Pf1N1B4_2934 0.47 -3.0
3,291,466 + Pf1N1B4_2934 0.76 -0.9
3,291,466 + Pf1N1B4_2934 0.76 +0.4
3,291,467 - Pf1N1B4_2934 0.76 -0.5
3,291,499 + Pf1N1B4_2934 0.81 -0.9
3,291,499 + Pf1N1B4_2934 0.81 -1.5
3,291,499 + Pf1N1B4_2934 0.81 +0.1
3,291,499 + Pf1N1B4_2934 0.81 +0.1
3,291,499 + Pf1N1B4_2934 0.81 -0.9
3,291,499 + Pf1N1B4_2934 0.81 +1.1
3,291,499 + Pf1N1B4_2934 0.81 -0.9
3,291,500 - Pf1N1B4_2934 0.81 +0.1
3,291,500 - Pf1N1B4_2934 0.81 -0.3
3,291,500 - Pf1N1B4_2934 0.81 +1.1
3,291,500 - Pf1N1B4_2934 0.81 -1.9
3,291,500 - Pf1N1B4_2934 0.81 +0.1
3,291,500 - Pf1N1B4_2934 0.81 -0.6
3,291,500 - Pf1N1B4_2934 0.81 +0.1
3,291,500 - Pf1N1B4_2934 0.81 -0.3
3,291,500 - -0.9
3,291,500 - Pf1N1B4_2934 0.81 +0.7
3,291,551 + Pf1N1B4_2934 0.89 -0.6
3,291,551 + Pf1N1B4_2934 0.89 +1.9
3,291,551 + Pf1N1B4_2934 0.89 +0.1
3,291,552 - -1.5
3,291,552 - Pf1N1B4_2934 0.89 +0.7
3,291,552 - Pf1N1B4_2934 0.89 +1.1
3,291,552 - Pf1N1B4_2934 0.89 -3.7
3,291,569 + +0.1
3,291,569 + +0.1
3,291,569 + +0.1
3,291,582 - -0.5
3,291,582 - +1.6
3,291,582 - -1.2
3,291,657 + +0.1
3,291,658 - +0.6
3,291,663 - +1.1
3,291,667 + +1.1
3,291,667 + +0.1
3,291,668 - +1.1
3,291,685 + +1.1
3,291,686 - +0.1
3,291,686 - -2.2
3,291,687 + -1.5
3,291,687 + +0.1
3,291,687 + -0.9
3,291,687 + -1.5
3,291,687 + -0.5
3,291,687 + +0.1
3,291,688 - -0.9
3,291,688 - -0.9
3,291,693 + +0.1
3,291,693 + +0.7
3,291,693 + +0.7
3,291,693 + -0.9
3,291,693 + +0.1
3,291,693 + -1.9
3,291,693 + -0.9
3,291,693 + +1.9
3,291,693 + +0.1
3,291,694 - -0.6
3,291,694 - -1.5
3,291,694 - +0.1
3,291,694 - -0.9
3,291,740 + -0.9
3,291,741 - -1.9
3,291,741 - -1.6
3,291,741 - -3.5
3,291,851 + -2.7
3,291,852 - -0.9
3,291,852 - +0.7
3,291,852 - -0.7
3,292,010 + Pf1N1B4_2935 0.38 -1.5
3,292,011 - Pf1N1B4_2935 0.38 -1.9
3,292,011 - Pf1N1B4_2935 0.38 -1.3
3,292,136 - Pf1N1B4_2935 0.61 -1.5
3,292,277 + Pf1N1B4_2935 0.86 -0.2
3,292,278 - Pf1N1B4_2935 0.86 +2.1
3,292,301 + -0.9
3,292,301 + -1.9
3,292,302 - +1.1
3,292,302 - -0.2
3,292,302 - -0.9
3,292,352 + +0.7
3,292,352 + -0.9
3,292,352 + -0.1
3,292,352 + -1.2
3,292,352 + +0.1
3,292,352 + +0.5
3,292,353 - +0.5
3,292,353 - +0.1
3,292,353 - -0.6
3,292,353 - +0.1
3,292,353 - +0.7
3,292,390 + +1.1
3,292,390 + -1.9
3,292,391 - -1.7
3,292,391 - -0.9
3,292,508 + +0.1
3,292,508 + +1.7
3,292,516 + +0.7
3,292,516 + -1.9
3,292,517 - -1.6
3,292,517 - +0.1
3,292,569 + +0.5
3,292,619 - -0.3
3,292,631 + Pf1N1B4_2936 0.10 +0.1
3,292,725 + Pf1N1B4_2936 0.16 -0.6
3,292,726 - Pf1N1B4_2936 0.16 -0.9
3,292,726 - Pf1N1B4_2936 0.16 -0.3
3,292,770 + Pf1N1B4_2936 0.18 -0.3
3,292,777 + Pf1N1B4_2936 0.19 +1.0
3,292,778 - Pf1N1B4_2936 0.19 -1.1
3,292,799 + Pf1N1B4_2936 0.20 -0.3
3,292,799 + Pf1N1B4_2936 0.20 -0.7
3,292,807 - Pf1N1B4_2936 0.20 -1.7
3,293,066 - Pf1N1B4_2936 0.35 -0.5
3,293,066 - Pf1N1B4_2936 0.35 -2.2
3,293,253 - Pf1N1B4_2936 0.46 -0.6
3,293,350 - Pf1N1B4_2936 0.52 -0.5
3,293,350 - Pf1N1B4_2936 0.52 -2.0

Or see this region's nucleotide sequence