Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2917

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2915 and Pf1N1B4_2916 are separated by 2 nucleotidesPf1N1B4_2916 and Pf1N1B4_2917 are separated by 4 nucleotidesPf1N1B4_2917 and Pf1N1B4_2918 are separated by 235 nucleotides Pf1N1B4_2915 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 3,272,829 to 3,273,680 _2915 Pf1N1B4_2916 - Outer membrane lipoprotein LolB precursor, at 3,273,683 to 3,274,300 _2916 Pf1N1B4_2917 - FIG140336: TPR domain protein, at 3,274,305 to 3,276,029 _2917 Pf1N1B4_2918 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 3,276,265 to 3,277,554 _2918 Position (kb) 3274 3275 3276 3277Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3274.490 kb on - strand, within Pf1N1B4_2917at 3274.490 kb on - strand, within Pf1N1B4_2917at 3274.490 kb on - strand, within Pf1N1B4_2917at 3274.637 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strandat 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strandat 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.751 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.856 kb on - strandat 3274.856 kb on - strand, within Pf1N1B4_2917at 3274.973 kb on - strand, within Pf1N1B4_2917at 3274.973 kb on - strand, within Pf1N1B4_2917at 3275.028 kb on - strand, within Pf1N1B4_2917at 3275.028 kb on - strand, within Pf1N1B4_2917at 3275.105 kb on - strand, within Pf1N1B4_2917at 3275.159 kb on - strand, within Pf1N1B4_2917at 3275.183 kb on - strand, within Pf1N1B4_2917at 3275.183 kb on - strand, within Pf1N1B4_2917at 3275.226 kb on - strand, within Pf1N1B4_2917at 3275.255 kb on - strand, within Pf1N1B4_2917at 3275.255 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.612 kb on - strand, within Pf1N1B4_2917at 3275.790 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.810 kb on - strand, within Pf1N1B4_2917at 3275.900 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.024 kb on - strandat 3276.030 kb on - strandat 3276.030 kb on - strandat 3276.032 kb on - strandat 3276.032 kb on - strandat 3276.032 kb on - strandat 3276.090 kb on + strandat 3276.090 kb on + strandat 3276.090 kb on + strandat 3276.091 kb on - strandat 3276.190 kb on + strandat 3276.190 kb on + strandat 3276.190 kb on + strandat 3276.190 kb on + strandat 3276.191 kb on - strandat 3276.191 kb on - strandat 3276.191 kb on - strandat 3276.191 kb on - strandat 3276.434 kb on + strand, within Pf1N1B4_2918

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,274,490 - Pf1N1B4_2917 0.11 -3.2
3,274,490 - Pf1N1B4_2917 0.11 +0.1
3,274,490 - Pf1N1B4_2917 0.11 -1.5
3,274,637 - Pf1N1B4_2917 0.19 -0.9
3,274,751 - Pf1N1B4_2917 0.26 -1.5
3,274,751 - Pf1N1B4_2917 0.26 -1.9
3,274,751 - Pf1N1B4_2917 0.26 -0.9
3,274,751 - -0.9
3,274,751 - Pf1N1B4_2917 0.26 -0.5
3,274,751 - Pf1N1B4_2917 0.26 -0.9
3,274,751 - Pf1N1B4_2917 0.26 -2.5
3,274,751 - -0.9
3,274,751 - Pf1N1B4_2917 0.26 -1.5
3,274,751 - Pf1N1B4_2917 0.26 -3.5
3,274,751 - Pf1N1B4_2917 0.26 +1.5
3,274,751 - Pf1N1B4_2917 0.26 -1.2
3,274,856 - Pf1N1B4_2917 0.32 -2.9
3,274,856 - Pf1N1B4_2917 0.32 +0.1
3,274,856 - Pf1N1B4_2917 0.32 -1.5
3,274,856 - Pf1N1B4_2917 0.32 -0.6
3,274,856 - Pf1N1B4_2917 0.32 -1.7
3,274,856 - Pf1N1B4_2917 0.32 -1.5
3,274,856 - +0.1
3,274,856 - Pf1N1B4_2917 0.32 +0.1
3,274,973 - Pf1N1B4_2917 0.39 +0.1
3,274,973 - Pf1N1B4_2917 0.39 -1.5
3,275,028 - Pf1N1B4_2917 0.42 -0.9
3,275,028 - Pf1N1B4_2917 0.42 -0.9
3,275,105 - Pf1N1B4_2917 0.46 -1.5
3,275,159 - Pf1N1B4_2917 0.50 +0.4
3,275,183 - Pf1N1B4_2917 0.51 -0.5
3,275,183 - Pf1N1B4_2917 0.51 -2.5
3,275,226 - Pf1N1B4_2917 0.53 -1.3
3,275,255 - Pf1N1B4_2917 0.55 -2.2
3,275,255 - Pf1N1B4_2917 0.55 +1.1
3,275,612 - Pf1N1B4_2917 0.76 -1.9
3,275,612 - Pf1N1B4_2917 0.76 -2.5
3,275,612 - Pf1N1B4_2917 0.76 -1.9
3,275,612 - Pf1N1B4_2917 0.76 -1.3
3,275,612 - Pf1N1B4_2917 0.76 -1.5
3,275,612 - Pf1N1B4_2917 0.76 -1.7
3,275,612 - Pf1N1B4_2917 0.76 -1.0
3,275,612 - Pf1N1B4_2917 0.76 +1.1
3,275,612 - Pf1N1B4_2917 0.76 -2.7
3,275,612 - Pf1N1B4_2917 0.76 +0.1
3,275,612 - Pf1N1B4_2917 0.76 -1.5
3,275,612 - Pf1N1B4_2917 0.76 -0.5
3,275,612 - Pf1N1B4_2917 0.76 -1.3
3,275,790 - Pf1N1B4_2917 0.86 -1.9
3,275,810 - Pf1N1B4_2917 0.87 +0.1
3,275,810 - Pf1N1B4_2917 0.87 -1.5
3,275,810 - Pf1N1B4_2917 0.87 +0.1
3,275,810 - Pf1N1B4_2917 0.87 -1.9
3,275,810 - Pf1N1B4_2917 0.87 -0.9
3,275,810 - Pf1N1B4_2917 0.87 -2.2
3,275,810 - Pf1N1B4_2917 0.87 -0.3
3,275,810 - Pf1N1B4_2917 0.87 -2.2
3,275,810 - Pf1N1B4_2917 0.87 -0.1
3,275,810 - Pf1N1B4_2917 0.87 -2.2
3,275,810 - Pf1N1B4_2917 0.87 +0.5
3,275,810 - Pf1N1B4_2917 0.87 -1.5
3,275,810 - Pf1N1B4_2917 0.87 -1.2
3,275,810 - Pf1N1B4_2917 0.87 -1.2
3,275,810 - Pf1N1B4_2917 0.87 -0.9
3,275,810 - Pf1N1B4_2917 0.87 -0.9
3,275,810 - Pf1N1B4_2917 0.87 -2.9
3,275,900 - -1.9
3,276,024 - +0.1
3,276,024 - -1.5
3,276,024 - -0.9
3,276,024 - -0.6
3,276,024 - -1.5
3,276,024 - +0.1
3,276,024 - -1.2
3,276,024 - -1.9
3,276,024 - -0.9
3,276,024 - -0.5
3,276,024 - -0.9
3,276,024 - -2.6
3,276,024 - +0.1
3,276,024 - -0.5
3,276,024 - +0.1
3,276,024 - -0.9
3,276,024 - -2.2
3,276,024 - +0.1
3,276,024 - -2.2
3,276,024 - -1.9
3,276,024 - -2.7
3,276,024 - +0.1
3,276,024 - +0.1
3,276,024 - -0.5
3,276,024 - +0.1
3,276,024 - -3.0
3,276,024 - -2.6
3,276,024 - -0.3
3,276,024 - -2.2
3,276,024 - -2.5
3,276,030 - -0.6
3,276,030 - -0.9
3,276,032 - +0.7
3,276,032 - +0.1
3,276,032 - -0.5
3,276,090 + -0.9
3,276,090 + +1.8
3,276,090 + -1.5
3,276,091 - +1.1
3,276,190 + -1.5
3,276,190 + +1.7
3,276,190 + +0.7
3,276,190 + -0.9
3,276,191 - +0.1
3,276,191 - -0.5
3,276,191 - -0.9
3,276,191 - -0.9
3,276,434 + Pf1N1B4_2918 0.13 +0.8

Or see this region's nucleotide sequence