Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2872 and Pf1N1B4_2873 overlap by 4 nucleotides Pf1N1B4_2873 and Pf1N1B4_2874 are separated by 24 nucleotides Pf1N1B4_2874 and Pf1N1B4_2875 are separated by 16 nucleotides Pf1N1B4_2875 and Pf1N1B4_2876 overlap by 1 nucleotides
Pf1N1B4_2872 - FIG00955330: hypothetical protein, at 3,218,545 to 3,220,101
_2872
Pf1N1B4_2873 - hypothetical protein, at 3,220,098 to 3,220,244
_2873
Pf1N1B4_2874 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 3,220,269 to 3,222,536
_2874
Pf1N1B4_2875 - FOG: TPR repeat, at 3,222,553 to 3,223,287
_2875
Pf1N1B4_2876 - Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C), at 3,223,287 to 3,223,622
_2876
Position (kb)
3220
3221
3222
3223 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3219.492 kb on + strand, within Pf1N1B4_2872 at 3219.870 kb on - strand, within Pf1N1B4_2872 at 3219.870 kb on - strand, within Pf1N1B4_2872 at 3219.981 kb on + strand at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.206 kb on + strand, within Pf1N1B4_2873 at 3220.208 kb on + strand, within Pf1N1B4_2873 at 3220.209 kb on - strand, within Pf1N1B4_2873 at 3220.795 kb on - strand, within Pf1N1B4_2874 at 3220.840 kb on - strand, within Pf1N1B4_2874 at 3221.010 kb on + strand, within Pf1N1B4_2874 at 3222.078 kb on + strand, within Pf1N1B4_2874 at 3222.078 kb on + strand, within Pf1N1B4_2874 at 3222.119 kb on + strand, within Pf1N1B4_2874 at 3222.441 kb on + strand at 3222.443 kb on + strand at 3223.418 kb on + strand, within Pf1N1B4_2876
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 3,219,492 + Pf1N1B4_2872 0.61 +0.5 3,219,870 - Pf1N1B4_2872 0.85 +0.1 3,219,870 - Pf1N1B4_2872 0.85 -1.0 3,219,981 + -0.8 3,220,206 + Pf1N1B4_2873 0.73 -1.5 3,220,206 + Pf1N1B4_2873 0.73 -3.5 3,220,206 + Pf1N1B4_2873 0.73 +1.3 3,220,206 + Pf1N1B4_2873 0.73 -0.5 3,220,206 + Pf1N1B4_2873 0.73 +1.1 3,220,208 + Pf1N1B4_2873 0.75 +0.1 3,220,209 - Pf1N1B4_2873 0.76 -0.1 3,220,795 - Pf1N1B4_2874 0.23 -1.7 3,220,840 - Pf1N1B4_2874 0.25 -1.5 3,221,010 + Pf1N1B4_2874 0.33 -0.9 3,222,078 + Pf1N1B4_2874 0.80 -2.7 3,222,078 + Pf1N1B4_2874 0.80 -2.2 3,222,119 + Pf1N1B4_2874 0.82 -1.5 3,222,441 + -2.2 3,222,443 + -1.2 3,223,418 + Pf1N1B4_2876 0.39 -2.2
Or see this region's nucleotide sequence