Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_274 and Pf1N1B4_275 are separated by 69 nucleotides Pf1N1B4_275 and Pf1N1B4_276 are separated by 350 nucleotides Pf1N1B4_276 and Pf1N1B4_277 are separated by 32 nucleotides
Pf1N1B4_274 - Transcriptional regulator, LysR family, at 333,631 to 334,623
_274
Pf1N1B4_275 - Organic hydroperoxide resistance transcriptional regulator, at 334,693 to 335,154
_275
Pf1N1B4_276 - Organic hydroperoxide resistance protein, at 335,505 to 335,924
_276
Pf1N1B4_277 - Lipase, at 335,957 to 336,973
_277
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 333.933 kb on + strand at 333.934 kb on - strand, within Pf1N1B4_274 at 334.109 kb on + strand, within Pf1N1B4_274 at 334.109 kb on + strand, within Pf1N1B4_274 at 334.109 kb on + strand, within Pf1N1B4_274 at 334.110 kb on - strand, within Pf1N1B4_274 at 334.112 kb on + strand, within Pf1N1B4_274 at 334.112 kb on + strand, within Pf1N1B4_274 at 334.112 kb on + strand, within Pf1N1B4_274 at 334.112 kb on + strand, within Pf1N1B4_274 at 334.112 kb on + strand, within Pf1N1B4_274 at 334.113 kb on - strand, within Pf1N1B4_274 at 334.113 kb on - strand, within Pf1N1B4_274 at 334.430 kb on + strand, within Pf1N1B4_274 at 334.430 kb on + strand, within Pf1N1B4_274 at 334.430 kb on + strand, within Pf1N1B4_274 at 334.430 kb on + strand, within Pf1N1B4_274 at 334.431 kb on - strand, within Pf1N1B4_274 at 334.431 kb on - strand at 334.431 kb on - strand at 334.431 kb on - strand, within Pf1N1B4_274 at 334.433 kb on + strand, within Pf1N1B4_274 at 334.498 kb on + strand at 334.498 kb on + strand, within Pf1N1B4_274 at 334.498 kb on + strand, within Pf1N1B4_274 at 334.499 kb on - strand, within Pf1N1B4_274 at 334.499 kb on - strand, within Pf1N1B4_274 at 334.499 kb on - strand, within Pf1N1B4_274 at 334.499 kb on - strand, within Pf1N1B4_274 at 334.552 kb on + strand at 334.622 kb on - strand at 334.795 kb on + strand, within Pf1N1B4_275 at 334.796 kb on - strand, within Pf1N1B4_275 at 334.796 kb on - strand, within Pf1N1B4_275 at 334.828 kb on + strand, within Pf1N1B4_275 at 334.994 kb on + strand, within Pf1N1B4_275 at 334.994 kb on + strand, within Pf1N1B4_275 at 334.995 kb on - strand at 335.130 kb on + strand at 335.131 kb on - strand at 335.131 kb on - strand at 335.145 kb on + strand at 335.348 kb on + strand at 335.348 kb on + strand at 335.348 kb on + strand at 335.349 kb on - strand at 335.349 kb on - strand at 335.356 kb on + strand at 335.357 kb on - strand at 335.421 kb on - strand at 335.518 kb on - strand at 335.845 kb on + strand, within Pf1N1B4_276 at 335.845 kb on + strand, within Pf1N1B4_276 at 335.846 kb on - strand, within Pf1N1B4_276 at 335.846 kb on - strand, within Pf1N1B4_276 at 335.846 kb on - strand, within Pf1N1B4_276 at 335.922 kb on + strand at 335.922 kb on + strand at 335.923 kb on - strand at 335.923 kb on - strand at 335.923 kb on - strand at 335.923 kb on - strand at 335.956 kb on + strand at 335.956 kb on + strand at 335.956 kb on + strand at 335.957 kb on - strand at 335.957 kb on - strand at 335.957 kb on - strand at 335.957 kb on - strand at 336.063 kb on + strand, within Pf1N1B4_277 at 336.063 kb on + strand, within Pf1N1B4_277 at 336.064 kb on - strand, within Pf1N1B4_277 at 336.064 kb on - strand, within Pf1N1B4_277 at 336.064 kb on - strand, within Pf1N1B4_277 at 336.064 kb on - strand, within Pf1N1B4_277 at 336.064 kb on - strand, within Pf1N1B4_277 at 336.064 kb on - strand at 336.065 kb on - strand, within Pf1N1B4_277 at 336.147 kb on + strand, within Pf1N1B4_277
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 333,933 + -0.1 333,934 - Pf1N1B4_274 0.31 +0.7 334,109 + Pf1N1B4_274 0.48 +0.9 334,109 + Pf1N1B4_274 0.48 -3.1 334,109 + Pf1N1B4_274 0.48 +0.3 334,110 - Pf1N1B4_274 0.48 -1.6 334,112 + Pf1N1B4_274 0.48 +1.9 334,112 + Pf1N1B4_274 0.48 -1.7 334,112 + Pf1N1B4_274 0.48 -1.1 334,112 + Pf1N1B4_274 0.48 -2.1 334,112 + Pf1N1B4_274 0.48 +0.0 334,113 - Pf1N1B4_274 0.49 -0.4 334,113 - Pf1N1B4_274 0.49 -0.6 334,430 + Pf1N1B4_274 0.80 -2.1 334,430 + Pf1N1B4_274 0.80 +0.4 334,430 + Pf1N1B4_274 0.80 +0.1 334,430 + Pf1N1B4_274 0.80 +1.9 334,431 - Pf1N1B4_274 0.81 -1.7 334,431 - -0.1 334,431 - +0.9 334,431 - Pf1N1B4_274 0.81 -1.6 334,433 + Pf1N1B4_274 0.81 -1.7 334,498 + +0.9 334,498 + Pf1N1B4_274 0.87 -0.1 334,498 + Pf1N1B4_274 0.87 +0.9 334,499 - Pf1N1B4_274 0.87 -1.3 334,499 - Pf1N1B4_274 0.87 +0.9 334,499 - Pf1N1B4_274 0.87 +0.9 334,499 - Pf1N1B4_274 0.87 +1.9 334,552 + -1.0 334,622 - +2.2 334,795 + Pf1N1B4_275 0.22 -1.1 334,796 - Pf1N1B4_275 0.22 -1.1 334,796 - Pf1N1B4_275 0.22 -1.7 334,828 + Pf1N1B4_275 0.29 -0.1 334,994 + Pf1N1B4_275 0.65 -2.1 334,994 + Pf1N1B4_275 0.65 +1.4 334,995 - +0.4 335,130 + -2.7 335,131 - +1.5 335,131 - +0.4 335,145 + -0.1 335,348 + +1.2 335,348 + -1.3 335,348 + +0.1 335,349 - +3.6 335,349 - -1.3 335,356 + -0.3 335,357 - +1.3 335,421 - +1.9 335,518 - -1.5 335,845 + Pf1N1B4_276 0.81 -0.1 335,845 + Pf1N1B4_276 0.81 -1.7 335,846 - Pf1N1B4_276 0.81 -0.9 335,846 - Pf1N1B4_276 0.81 +0.5 335,846 - Pf1N1B4_276 0.81 +0.6 335,922 + +1.4 335,922 + -1.6 335,923 - -0.7 335,923 - -0.4 335,923 - -0.4 335,923 - +0.7 335,956 + -0.6 335,956 + -1.3 335,956 + -0.6 335,957 - -0.7 335,957 - -1.1 335,957 - -0.1 335,957 - +1.9 336,063 + Pf1N1B4_277 0.10 -1.7 336,063 + Pf1N1B4_277 0.10 -1.8 336,064 - Pf1N1B4_277 0.11 +0.2 336,064 - Pf1N1B4_277 0.11 +1.4 336,064 - Pf1N1B4_277 0.11 -0.7 336,064 - Pf1N1B4_277 0.11 +0.4 336,064 - Pf1N1B4_277 0.11 +0.9 336,064 - -0.1 336,065 - Pf1N1B4_277 0.11 -0.5 336,147 + Pf1N1B4_277 0.19 -0.7
Or see this region's nucleotide sequence