Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2706

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2705 and Pf1N1B4_2706 are separated by 280 nucleotidesPf1N1B4_2706 and Pf1N1B4_2707 are separated by 106 nucleotides Pf1N1B4_2705 - Leucyl-tRNA synthetase (EC 6.1.1.4), at 3,041,406 to 3,044,012 _2705 Pf1N1B4_2706 - FIG00954871: hypothetical protein, at 3,044,293 to 3,044,613 _2706 Pf1N1B4_2707 - Putative membrane protein, at 3,044,720 to 3,045,499 _2707 Position (kb) 3044 3045Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3044.032 kb on - strandat 3044.032 kb on - strandat 3044.043 kb on - strandat 3044.043 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.140 kb on - strandat 3044.173 kb on + strandat 3044.173 kb on + strandat 3044.173 kb on + strandat 3044.174 kb on - strandat 3044.192 kb on + strandat 3044.192 kb on + strandat 3044.192 kb on + strandat 3044.192 kb on + strandat 3044.193 kb on - strandat 3044.193 kb on - strandat 3044.193 kb on - strandat 3044.193 kb on - strandat 3044.273 kb on + strandat 3044.273 kb on + strandat 3044.316 kb on + strandat 3044.332 kb on + strand, within Pf1N1B4_2706at 3044.332 kb on + strand, within Pf1N1B4_2706at 3044.345 kb on + strand, within Pf1N1B4_2706at 3044.465 kb on - strand, within Pf1N1B4_2706at 3044.476 kb on - strand, within Pf1N1B4_2706at 3044.545 kb on - strand, within Pf1N1B4_2706at 3044.562 kb on + strand, within Pf1N1B4_2706at 3044.563 kb on - strand, within Pf1N1B4_2706at 3044.611 kb on + strandat 3044.611 kb on + strandat 3044.611 kb on + strandat 3044.611 kb on + strandat 3044.611 kb on + strandat 3044.611 kb on + strandat 3044.612 kb on - strandat 3044.612 kb on - strandat 3044.612 kb on - strandat 3044.635 kb on - strandat 3044.691 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.706 kb on + strandat 3044.707 kb on - strandat 3044.707 kb on - strandat 3044.707 kb on - strandat 3044.741 kb on - strandat 3044.751 kb on + strandat 3044.751 kb on + strandat 3044.752 kb on - strandat 3044.769 kb on + strandat 3044.769 kb on + strandat 3044.770 kb on - strandat 3044.770 kb on - strandat 3045.033 kb on + strand, within Pf1N1B4_2707at 3045.033 kb on + strand, within Pf1N1B4_2707at 3045.034 kb on - strand, within Pf1N1B4_2707at 3045.240 kb on + strand, within Pf1N1B4_2707at 3045.240 kb on + strand, within Pf1N1B4_2707at 3045.241 kb on - strand, within Pf1N1B4_2707at 3045.241 kb on - strand, within Pf1N1B4_2707at 3045.241 kb on - strand, within Pf1N1B4_2707at 3045.360 kb on + strand, within Pf1N1B4_2707at 3045.501 kb on - strandat 3045.567 kb on + strandat 3045.567 kb on + strandat 3045.567 kb on + strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.568 kb on - strandat 3045.587 kb on + strandat 3045.587 kb on + strandat 3045.587 kb on + strandat 3045.588 kb on - strandat 3045.588 kb on - strandat 3045.588 kb on - strandat 3045.588 kb on - strandat 3045.588 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
3,044,032 - -0.6
3,044,032 - +1.0
3,044,043 - +0.2
3,044,043 - -0.3
3,044,140 - -0.4
3,044,140 - +0.2
3,044,140 - -1.8
3,044,140 - +2.3
3,044,140 - -0.8
3,044,140 - -2.6
3,044,140 - +0.2
3,044,140 - +1.4
3,044,140 - +0.7
3,044,140 - -0.4
3,044,140 - -1.2
3,044,140 - -3.0
3,044,140 - -1.8
3,044,140 - -0.6
3,044,140 - -3.0
3,044,140 - -1.6
3,044,140 - -1.6
3,044,140 - -1.4
3,044,140 - +0.5
3,044,140 - +0.2
3,044,140 - -1.8
3,044,140 - +0.2
3,044,140 - -1.4
3,044,140 - -0.4
3,044,140 - +0.0
3,044,140 - -1.1
3,044,140 - +0.2
3,044,173 + +0.2
3,044,173 + -0.2
3,044,173 + -0.8
3,044,174 - -0.8
3,044,192 + -1.6
3,044,192 + -2.4
3,044,192 + -1.0
3,044,192 + -1.6
3,044,193 - -0.1
3,044,193 - +1.7
3,044,193 - +1.2
3,044,193 - +2.5
3,044,273 + +0.2
3,044,273 + -3.3
3,044,316 + +0.2
3,044,332 + Pf1N1B4_2706 0.12 -1.8
3,044,332 + Pf1N1B4_2706 0.12 -2.8
3,044,345 + Pf1N1B4_2706 0.16 -0.3
3,044,465 - Pf1N1B4_2706 0.54 -1.4
3,044,476 - Pf1N1B4_2706 0.57 +0.2
3,044,545 - Pf1N1B4_2706 0.79 -0.4
3,044,562 + Pf1N1B4_2706 0.84 +2.2
3,044,563 - Pf1N1B4_2706 0.84 -1.8
3,044,611 + +0.2
3,044,611 + -0.6
3,044,611 + +0.2
3,044,611 + -0.8
3,044,611 + +1.0
3,044,611 + -0.8
3,044,612 - -0.8
3,044,612 - +2.2
3,044,612 - +0.2
3,044,635 - +0.0
3,044,691 + -2.4
3,044,706 + +1.9
3,044,706 + -2.2
3,044,706 + -1.8
3,044,706 + -1.3
3,044,706 + -0.8
3,044,706 + +0.8
3,044,706 + +1.2
3,044,706 + -0.6
3,044,706 + +0.6
3,044,706 + +0.6
3,044,706 + +1.2
3,044,707 - +0.5
3,044,707 - +1.2
3,044,707 - +0.8
3,044,741 - +0.6
3,044,751 + -1.8
3,044,751 + -0.4
3,044,752 - -0.8
3,044,769 + -0.3
3,044,769 + +2.0
3,044,770 - +0.5
3,044,770 - +0.2
3,045,033 + Pf1N1B4_2707 0.40 +0.6
3,045,033 + Pf1N1B4_2707 0.40 +0.2
3,045,034 - Pf1N1B4_2707 0.40 -1.4
3,045,240 + Pf1N1B4_2707 0.67 -0.7
3,045,240 + Pf1N1B4_2707 0.67 -0.6
3,045,241 - Pf1N1B4_2707 0.67 -2.2
3,045,241 - Pf1N1B4_2707 0.67 +0.6
3,045,241 - Pf1N1B4_2707 0.67 +0.2
3,045,360 + Pf1N1B4_2707 0.82 -0.8
3,045,501 - +0.9
3,045,567 + +0.6
3,045,567 + -0.1
3,045,567 + +0.6
3,045,568 - +2.0
3,045,568 - +0.6
3,045,568 - +0.1
3,045,568 - +1.9
3,045,568 - +1.7
3,045,568 - -0.1
3,045,568 - +0.2
3,045,568 - +1.5
3,045,568 - -0.6
3,045,587 + -1.4
3,045,587 + +1.4
3,045,587 + +0.2
3,045,588 - -0.8
3,045,588 - +2.7
3,045,588 - -0.3
3,045,588 - -1.4
3,045,588 - -1.2

Or see this region's nucleotide sequence