Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2703

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2701 and Pf1N1B4_2702 are separated by 62 nucleotidesPf1N1B4_2702 and Pf1N1B4_2703 are separated by 233 nucleotidesPf1N1B4_2703 and Pf1N1B4_2704 are separated by 39 nucleotidesPf1N1B4_2704 and Pf1N1B4_2705 are separated by 89 nucleotides Pf1N1B4_2701 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 3,037,851 to 3,039,173 _2701 Pf1N1B4_2702 - FIG00957593: hypothetical protein, at 3,039,236 to 3,039,400 _2702 Pf1N1B4_2703 - DNA polymerase III delta subunit (EC 2.7.7.7), at 3,039,634 to 3,040,671 _2703 Pf1N1B4_2704 - LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B), at 3,040,711 to 3,041,316 _2704 Pf1N1B4_2705 - Leucyl-tRNA synthetase (EC 6.1.1.4), at 3,041,406 to 3,044,012 _2705 Position (kb) 3039 3040 3041Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.678 kb on + strand, within Pf1N1B4_2701at 3038.679 kb on - strand, within Pf1N1B4_2701at 3038.679 kb on - strand, within Pf1N1B4_2701at 3038.679 kb on - strand, within Pf1N1B4_2701at 3038.679 kb on - strand, within Pf1N1B4_2701at 3038.679 kb on - strand, within Pf1N1B4_2701at 3038.679 kb on - strand, within Pf1N1B4_2701at 3038.694 kb on + strand, within Pf1N1B4_2701at 3038.694 kb on + strand, within Pf1N1B4_2701at 3038.818 kb on + strand, within Pf1N1B4_2701at 3038.818 kb on + strand, within Pf1N1B4_2701at 3038.818 kb on + strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.819 kb on - strand, within Pf1N1B4_2701at 3038.838 kb on - strand, within Pf1N1B4_2701at 3038.838 kb on - strand, within Pf1N1B4_2701at 3038.838 kb on - strand, within Pf1N1B4_2701at 3038.945 kb on + strand, within Pf1N1B4_2701at 3038.945 kb on + strand, within Pf1N1B4_2701at 3039.129 kb on + strandat 3039.129 kb on + strandat 3039.129 kb on + strandat 3039.129 kb on + strandat 3039.129 kb on + strandat 3039.129 kb on + strandat 3039.130 kb on - strandat 3039.130 kb on - strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.161 kb on + strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.162 kb on - strandat 3039.190 kb on + strandat 3039.190 kb on + strandat 3039.190 kb on + strandat 3039.210 kb on + strandat 3039.210 kb on + strandat 3039.210 kb on + strandat 3039.210 kb on + strandat 3039.211 kb on - strandat 3039.252 kb on + strandat 3039.252 kb on + strandat 3039.252 kb on + strandat 3039.252 kb on + strandat 3039.252 kb on + strandat 3039.252 kb on + strandat 3039.253 kb on - strand, within Pf1N1B4_2702at 3039.271 kb on + strand, within Pf1N1B4_2702at 3039.440 kb on - strandat 3039.440 kb on - strandat 3039.481 kb on + strandat 3039.481 kb on + strandat 3039.482 kb on - strandat 3039.482 kb on - strandat 3039.482 kb on - strandat 3039.482 kb on - strandat 3039.492 kb on - strandat 3039.635 kb on + strandat 3040.672 kb on - strandat 3040.672 kb on - strandat 3040.672 kb on - strandat 3040.713 kb on - strandat 3040.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,038,678 + Pf1N1B4_2701 0.63 +2.1
3,038,678 + Pf1N1B4_2701 0.63 +1.0
3,038,678 + Pf1N1B4_2701 0.63 +0.7
3,038,678 + Pf1N1B4_2701 0.63 +1.1
3,038,678 + Pf1N1B4_2701 0.63 +0.9
3,038,678 + Pf1N1B4_2701 0.63 +1.3
3,038,678 + Pf1N1B4_2701 0.63 +1.6
3,038,678 + Pf1N1B4_2701 0.63 +2.1
3,038,678 + Pf1N1B4_2701 0.63 +1.4
3,038,678 + Pf1N1B4_2701 0.63 +1.1
3,038,679 - Pf1N1B4_2701 0.63 +1.0
3,038,679 - Pf1N1B4_2701 0.63 +0.2
3,038,679 - Pf1N1B4_2701 0.63 +1.5
3,038,679 - Pf1N1B4_2701 0.63 +3.0
3,038,679 - Pf1N1B4_2701 0.63 +1.6
3,038,679 - Pf1N1B4_2701 0.63 +1.8
3,038,694 + Pf1N1B4_2701 0.64 +1.7
3,038,694 + Pf1N1B4_2701 0.64 +1.7
3,038,818 + Pf1N1B4_2701 0.73 +1.1
3,038,818 + Pf1N1B4_2701 0.73 +1.2
3,038,818 + Pf1N1B4_2701 0.73 +1.3
3,038,819 - Pf1N1B4_2701 0.73 +0.6
3,038,819 - Pf1N1B4_2701 0.73 +0.0
3,038,819 - Pf1N1B4_2701 0.73 +1.8
3,038,819 - Pf1N1B4_2701 0.73 +0.6
3,038,819 - Pf1N1B4_2701 0.73 +1.4
3,038,819 - Pf1N1B4_2701 0.73 +1.4
3,038,819 - Pf1N1B4_2701 0.73 +2.0
3,038,838 - Pf1N1B4_2701 0.75 +2.1
3,038,838 - Pf1N1B4_2701 0.75 +1.1
3,038,838 - Pf1N1B4_2701 0.75 +1.7
3,038,945 + Pf1N1B4_2701 0.83 +0.3
3,038,945 + Pf1N1B4_2701 0.83 +1.2
3,039,129 + +1.3
3,039,129 + +2.2
3,039,129 + +0.1
3,039,129 + +1.9
3,039,129 + -1.1
3,039,129 + +0.9
3,039,130 - +2.1
3,039,130 - +1.4
3,039,161 + -1.4
3,039,161 + +1.1
3,039,161 + -0.4
3,039,161 + +1.1
3,039,161 + +1.2
3,039,161 + +1.5
3,039,161 + +1.3
3,039,161 + +0.2
3,039,161 + +3.4
3,039,161 + +2.5
3,039,161 + -1.6
3,039,162 - -0.2
3,039,162 - +0.4
3,039,162 - +0.0
3,039,162 - +2.2
3,039,162 - +2.2
3,039,162 - +1.4
3,039,162 - +1.2
3,039,162 - +1.5
3,039,162 - +0.5
3,039,162 - +0.7
3,039,162 - +2.2
3,039,162 - +2.0
3,039,162 - +1.8
3,039,162 - +0.9
3,039,190 + +3.1
3,039,190 + +2.4
3,039,190 + +0.7
3,039,210 + +1.2
3,039,210 + +1.3
3,039,210 + +1.4
3,039,210 + +2.0
3,039,211 - +0.4
3,039,252 + -0.1
3,039,252 + +1.2
3,039,252 + -0.2
3,039,252 + +0.2
3,039,252 + -0.1
3,039,252 + +1.2
3,039,253 - Pf1N1B4_2702 0.10 -2.2
3,039,271 + Pf1N1B4_2702 0.21 +1.2
3,039,440 - +1.2
3,039,440 - +0.6
3,039,481 + +0.6
3,039,481 + -1.4
3,039,482 - +0.2
3,039,482 - -1.1
3,039,482 - +0.6
3,039,482 - +0.4
3,039,492 - -2.1
3,039,635 + -0.8
3,040,672 - -3.2
3,040,672 - +0.2
3,040,672 - -1.4
3,040,713 - -1.8
3,040,713 - -2.0

Or see this region's nucleotide sequence