Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2701 and Pf1N1B4_2702 are separated by 62 nucleotides Pf1N1B4_2702 and Pf1N1B4_2703 are separated by 233 nucleotides Pf1N1B4_2703 and Pf1N1B4_2704 are separated by 39 nucleotides Pf1N1B4_2704 and Pf1N1B4_2705 are separated by 89 nucleotides
Pf1N1B4_2701 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 3,037,851 to 3,039,173
_2701
Pf1N1B4_2702 - FIG00957593: hypothetical protein, at 3,039,236 to 3,039,400
_2702
Pf1N1B4_2703 - DNA polymerase III delta subunit (EC 2.7.7.7), at 3,039,634 to 3,040,671
_2703
Pf1N1B4_2704 - LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B), at 3,040,711 to 3,041,316
_2704
Pf1N1B4_2705 - Leucyl-tRNA synthetase (EC 6.1.1.4), at 3,041,406 to 3,044,012
_2705
Position (kb)
3039
3040
3041 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.678 kb on + strand, within Pf1N1B4_2701 at 3038.679 kb on - strand, within Pf1N1B4_2701 at 3038.679 kb on - strand, within Pf1N1B4_2701 at 3038.679 kb on - strand, within Pf1N1B4_2701 at 3038.679 kb on - strand, within Pf1N1B4_2701 at 3038.679 kb on - strand, within Pf1N1B4_2701 at 3038.679 kb on - strand, within Pf1N1B4_2701 at 3038.694 kb on + strand, within Pf1N1B4_2701 at 3038.694 kb on + strand, within Pf1N1B4_2701 at 3038.818 kb on + strand, within Pf1N1B4_2701 at 3038.818 kb on + strand, within Pf1N1B4_2701 at 3038.818 kb on + strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.819 kb on - strand, within Pf1N1B4_2701 at 3038.838 kb on - strand, within Pf1N1B4_2701 at 3038.838 kb on - strand, within Pf1N1B4_2701 at 3038.838 kb on - strand, within Pf1N1B4_2701 at 3038.945 kb on + strand, within Pf1N1B4_2701 at 3038.945 kb on + strand, within Pf1N1B4_2701 at 3039.129 kb on + strand at 3039.129 kb on + strand at 3039.129 kb on + strand at 3039.129 kb on + strand at 3039.129 kb on + strand at 3039.129 kb on + strand at 3039.130 kb on - strand at 3039.130 kb on - strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.161 kb on + strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.162 kb on - strand at 3039.190 kb on + strand at 3039.190 kb on + strand at 3039.190 kb on + strand at 3039.210 kb on + strand at 3039.210 kb on + strand at 3039.210 kb on + strand at 3039.210 kb on + strand at 3039.211 kb on - strand at 3039.252 kb on + strand at 3039.252 kb on + strand at 3039.252 kb on + strand at 3039.252 kb on + strand at 3039.252 kb on + strand at 3039.252 kb on + strand at 3039.253 kb on - strand, within Pf1N1B4_2702 at 3039.271 kb on + strand, within Pf1N1B4_2702 at 3039.440 kb on - strand at 3039.440 kb on - strand at 3039.481 kb on + strand at 3039.481 kb on + strand at 3039.482 kb on - strand at 3039.482 kb on - strand at 3039.482 kb on - strand at 3039.482 kb on - strand at 3039.492 kb on - strand at 3039.635 kb on + strand at 3040.672 kb on - strand at 3040.672 kb on - strand at 3040.672 kb on - strand at 3040.713 kb on - strand at 3040.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 3,038,678 + Pf1N1B4_2701 0.63 +2.1 3,038,678 + Pf1N1B4_2701 0.63 +1.0 3,038,678 + Pf1N1B4_2701 0.63 +0.7 3,038,678 + Pf1N1B4_2701 0.63 +1.1 3,038,678 + Pf1N1B4_2701 0.63 +0.9 3,038,678 + Pf1N1B4_2701 0.63 +1.3 3,038,678 + Pf1N1B4_2701 0.63 +1.6 3,038,678 + Pf1N1B4_2701 0.63 +2.1 3,038,678 + Pf1N1B4_2701 0.63 +1.4 3,038,678 + Pf1N1B4_2701 0.63 +1.1 3,038,679 - Pf1N1B4_2701 0.63 +1.0 3,038,679 - Pf1N1B4_2701 0.63 +0.2 3,038,679 - Pf1N1B4_2701 0.63 +1.5 3,038,679 - Pf1N1B4_2701 0.63 +3.0 3,038,679 - Pf1N1B4_2701 0.63 +1.6 3,038,679 - Pf1N1B4_2701 0.63 +1.8 3,038,694 + Pf1N1B4_2701 0.64 +1.7 3,038,694 + Pf1N1B4_2701 0.64 +1.7 3,038,818 + Pf1N1B4_2701 0.73 +1.1 3,038,818 + Pf1N1B4_2701 0.73 +1.2 3,038,818 + Pf1N1B4_2701 0.73 +1.3 3,038,819 - Pf1N1B4_2701 0.73 +0.6 3,038,819 - Pf1N1B4_2701 0.73 +0.0 3,038,819 - Pf1N1B4_2701 0.73 +1.8 3,038,819 - Pf1N1B4_2701 0.73 +0.6 3,038,819 - Pf1N1B4_2701 0.73 +1.4 3,038,819 - Pf1N1B4_2701 0.73 +1.4 3,038,819 - Pf1N1B4_2701 0.73 +2.0 3,038,838 - Pf1N1B4_2701 0.75 +2.1 3,038,838 - Pf1N1B4_2701 0.75 +1.1 3,038,838 - Pf1N1B4_2701 0.75 +1.7 3,038,945 + Pf1N1B4_2701 0.83 +0.3 3,038,945 + Pf1N1B4_2701 0.83 +1.2 3,039,129 + +1.3 3,039,129 + +2.2 3,039,129 + +0.1 3,039,129 + +1.9 3,039,129 + -1.1 3,039,129 + +0.9 3,039,130 - +2.1 3,039,130 - +1.4 3,039,161 + -1.4 3,039,161 + +1.1 3,039,161 + -0.4 3,039,161 + +1.1 3,039,161 + +1.2 3,039,161 + +1.5 3,039,161 + +1.3 3,039,161 + +0.2 3,039,161 + +3.4 3,039,161 + +2.5 3,039,161 + -1.6 3,039,162 - -0.2 3,039,162 - +0.4 3,039,162 - +0.0 3,039,162 - +2.2 3,039,162 - +2.2 3,039,162 - +1.4 3,039,162 - +1.2 3,039,162 - +1.5 3,039,162 - +0.5 3,039,162 - +0.7 3,039,162 - +2.2 3,039,162 - +2.0 3,039,162 - +1.8 3,039,162 - +0.9 3,039,190 + +3.1 3,039,190 + +2.4 3,039,190 + +0.7 3,039,210 + +1.2 3,039,210 + +1.3 3,039,210 + +1.4 3,039,210 + +2.0 3,039,211 - +0.4 3,039,252 + -0.1 3,039,252 + +1.2 3,039,252 + -0.2 3,039,252 + +0.2 3,039,252 + -0.1 3,039,252 + +1.2 3,039,253 - Pf1N1B4_2702 0.10 -2.2 3,039,271 + Pf1N1B4_2702 0.21 +1.2 3,039,440 - +1.2 3,039,440 - +0.6 3,039,481 + +0.6 3,039,481 + -1.4 3,039,482 - +0.2 3,039,482 - -1.1 3,039,482 - +0.6 3,039,482 - +0.4 3,039,492 - -2.1 3,039,635 + -0.8 3,040,672 - -3.2 3,040,672 - +0.2 3,040,672 - -1.4 3,040,713 - -1.8 3,040,713 - -2.0
Or see this region's nucleotide sequence