Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2696

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2695 and Pf1N1B4_2696 are separated by 182 nucleotidesPf1N1B4_2696 and Pf1N1B4_2697 are separated by 80 nucleotidesPf1N1B4_2697 and Pf1N1B4_2698 overlap by 1 nucleotides Pf1N1B4_2695 - Rare lipoprotein A precursor, at 3,032,246 to 3,033,241 _2695 Pf1N1B4_2696 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 3,033,424 to 3,034,581 _2696 Pf1N1B4_2697 - Proposed lipoate regulatory protein YbeD, at 3,034,662 to 3,034,937 _2697 Pf1N1B4_2698 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 3,034,937 to 3,035,584 _2698 Position (kb) 3033 3034 3035Strain fitness (log2 ratio) -1 0 1 2 3at 3032.881 kb on + strand, within Pf1N1B4_2695at 3032.997 kb on + strand, within Pf1N1B4_2695at 3032.997 kb on + strand, within Pf1N1B4_2695at 3033.014 kb on + strand, within Pf1N1B4_2695at 3033.014 kb on + strand, within Pf1N1B4_2695at 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.246 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.249 kb on + strandat 3033.379 kb on + strandat 3033.379 kb on + strandat 3035.565 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
3,032,881 + Pf1N1B4_2695 0.64 +0.2
3,032,997 + Pf1N1B4_2695 0.75 -1.1
3,032,997 + Pf1N1B4_2695 0.75 +2.2
3,033,014 + Pf1N1B4_2695 0.77 +1.4
3,033,014 + Pf1N1B4_2695 0.77 +1.2
3,033,246 + +1.7
3,033,246 + +2.2
3,033,246 + +3.3
3,033,246 + +1.1
3,033,246 + +2.1
3,033,246 + +1.0
3,033,246 + +3.7
3,033,246 + +0.2
3,033,246 + +1.2
3,033,246 + +1.7
3,033,246 + +0.2
3,033,246 + +1.3
3,033,246 + +0.9
3,033,246 + +2.8
3,033,246 + +0.9
3,033,246 + +0.3
3,033,246 + -0.6
3,033,246 + +2.2
3,033,246 + +0.5
3,033,246 + +2.3
3,033,249 + -0.7
3,033,249 + +1.7
3,033,249 + +3.7
3,033,249 + +3.1
3,033,249 + +1.7
3,033,249 + +1.0
3,033,249 + +2.3
3,033,249 + +0.7
3,033,379 + +0.8
3,033,379 + +0.9
3,035,565 + -0.4

Or see this region's nucleotide sequence