Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2694

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2693 and Pf1N1B4_2694 are separated by 17 nucleotidesPf1N1B4_2694 and Pf1N1B4_2695 are separated by 14 nucleotides Pf1N1B4_2693 - Rod shape-determining protein RodA, at 3,030,058 to 3,031,203 _2693 Pf1N1B4_2694 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 3,031,221 to 3,032,231 _2694 Pf1N1B4_2695 - Rare lipoprotein A precursor, at 3,032,246 to 3,033,241 _2695 Position (kb) 3031 3032 3033Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3031.205 kb on + strandat 3031.205 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.228 kb on + strandat 3031.229 kb on - strandat 3031.273 kb on + strandat 3031.273 kb on + strandat 3031.273 kb on + strandat 3031.286 kb on + strandat 3031.317 kb on + strandat 3031.365 kb on + strand, within Pf1N1B4_2694at 3031.366 kb on - strand, within Pf1N1B4_2694at 3031.476 kb on + strandat 3031.476 kb on + strand, within Pf1N1B4_2694at 3031.569 kb on + strand, within Pf1N1B4_2694at 3031.569 kb on + strand, within Pf1N1B4_2694at 3031.570 kb on - strand, within Pf1N1B4_2694at 3031.570 kb on - strand, within Pf1N1B4_2694at 3031.570 kb on - strandat 3031.570 kb on - strand, within Pf1N1B4_2694at 3031.680 kb on + strand, within Pf1N1B4_2694at 3031.776 kb on + strand, within Pf1N1B4_2694at 3031.776 kb on + strand, within Pf1N1B4_2694at 3031.776 kb on + strand, within Pf1N1B4_2694at 3031.776 kb on + strand, within Pf1N1B4_2694at 3031.776 kb on + strand, within Pf1N1B4_2694at 3031.777 kb on - strand, within Pf1N1B4_2694at 3031.777 kb on - strand, within Pf1N1B4_2694at 3031.777 kb on - strand, within Pf1N1B4_2694at 3031.777 kb on - strand, within Pf1N1B4_2694at 3031.777 kb on - strand, within Pf1N1B4_2694at 3031.777 kb on - strand, within Pf1N1B4_2694at 3031.827 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.859 kb on + strand, within Pf1N1B4_2694at 3031.860 kb on - strand, within Pf1N1B4_2694at 3031.860 kb on - strand, within Pf1N1B4_2694at 3031.860 kb on - strand, within Pf1N1B4_2694at 3031.860 kb on - strand, within Pf1N1B4_2694at 3031.860 kb on - strand, within Pf1N1B4_2694at 3031.860 kb on - strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.862 kb on + strand, within Pf1N1B4_2694at 3031.863 kb on - strand, within Pf1N1B4_2694at 3031.905 kb on + strand, within Pf1N1B4_2694at 3031.905 kb on + strand, within Pf1N1B4_2694at 3031.905 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.975 kb on + strand, within Pf1N1B4_2694at 3031.976 kb on - strand, within Pf1N1B4_2694at 3031.976 kb on - strand, within Pf1N1B4_2694at 3032.069 kb on + strand, within Pf1N1B4_2694at 3032.069 kb on + strand, within Pf1N1B4_2694at 3032.069 kb on + strand, within Pf1N1B4_2694at 3032.069 kb on + strand, within Pf1N1B4_2694at 3032.069 kb on + strand, within Pf1N1B4_2694at 3032.069 kb on + strand, within Pf1N1B4_2694at 3032.115 kb on + strand, within Pf1N1B4_2694at 3032.156 kb on + strandat 3032.156 kb on + strandat 3032.156 kb on + strandat 3032.156 kb on + strandat 3032.156 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.172 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.185 kb on + strandat 3032.229 kb on + strandat 3032.229 kb on + strandat 3032.229 kb on + strandat 3032.229 kb on + strandat 3032.229 kb on + strandat 3032.229 kb on + strandat 3032.245 kb on + strandat 3032.245 kb on + strandat 3032.245 kb on + strandat 3032.881 kb on + strand, within Pf1N1B4_2695at 3032.997 kb on + strand, within Pf1N1B4_2695at 3032.997 kb on + strand, within Pf1N1B4_2695at 3033.014 kb on + strand, within Pf1N1B4_2695at 3033.014 kb on + strand, within Pf1N1B4_2695

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,031,205 + +0.7
3,031,205 + +0.8
3,031,228 + +3.6
3,031,228 + +0.2
3,031,228 + +3.4
3,031,228 + +1.0
3,031,228 + +1.6
3,031,228 + +1.0
3,031,228 + +1.7
3,031,228 + +2.0
3,031,228 + -0.8
3,031,229 - -0.2
3,031,273 + +2.1
3,031,273 + +2.3
3,031,273 + +2.0
3,031,286 + +0.6
3,031,317 + +0.6
3,031,365 + Pf1N1B4_2694 0.14 -1.4
3,031,366 - Pf1N1B4_2694 0.14 -1.2
3,031,476 + +2.5
3,031,476 + Pf1N1B4_2694 0.25 -1.2
3,031,569 + Pf1N1B4_2694 0.34 +1.6
3,031,569 + Pf1N1B4_2694 0.34 +1.1
3,031,570 - Pf1N1B4_2694 0.35 +1.2
3,031,570 - Pf1N1B4_2694 0.35 +0.5
3,031,570 - -0.8
3,031,570 - Pf1N1B4_2694 0.35 -1.4
3,031,680 + Pf1N1B4_2694 0.45 +1.7
3,031,776 + Pf1N1B4_2694 0.55 +0.5
3,031,776 + Pf1N1B4_2694 0.55 +2.0
3,031,776 + Pf1N1B4_2694 0.55 +0.5
3,031,776 + Pf1N1B4_2694 0.55 +2.4
3,031,776 + Pf1N1B4_2694 0.55 +0.5
3,031,777 - Pf1N1B4_2694 0.55 -1.1
3,031,777 - Pf1N1B4_2694 0.55 -0.6
3,031,777 - Pf1N1B4_2694 0.55 -0.8
3,031,777 - Pf1N1B4_2694 0.55 -0.6
3,031,777 - Pf1N1B4_2694 0.55 +0.9
3,031,777 - Pf1N1B4_2694 0.55 -2.6
3,031,827 + Pf1N1B4_2694 0.60 +2.8
3,031,859 + Pf1N1B4_2694 0.63 +1.0
3,031,859 + Pf1N1B4_2694 0.63 +1.5
3,031,859 + Pf1N1B4_2694 0.63 +1.2
3,031,859 + Pf1N1B4_2694 0.63 +1.2
3,031,859 + Pf1N1B4_2694 0.63 +2.4
3,031,859 + Pf1N1B4_2694 0.63 +1.2
3,031,859 + Pf1N1B4_2694 0.63 +2.1
3,031,859 + Pf1N1B4_2694 0.63 +2.2
3,031,859 + Pf1N1B4_2694 0.63 +2.7
3,031,859 + Pf1N1B4_2694 0.63 +1.6
3,031,860 - Pf1N1B4_2694 0.63 +1.4
3,031,860 - Pf1N1B4_2694 0.63 +1.3
3,031,860 - Pf1N1B4_2694 0.63 -0.6
3,031,860 - Pf1N1B4_2694 0.63 -1.8
3,031,860 - Pf1N1B4_2694 0.63 +0.2
3,031,860 - Pf1N1B4_2694 0.63 -0.1
3,031,862 + Pf1N1B4_2694 0.63 +3.9
3,031,862 + Pf1N1B4_2694 0.63 +1.1
3,031,862 + Pf1N1B4_2694 0.63 +1.6
3,031,862 + Pf1N1B4_2694 0.63 +0.5
3,031,862 + Pf1N1B4_2694 0.63 +2.1
3,031,862 + Pf1N1B4_2694 0.63 +1.6
3,031,862 + Pf1N1B4_2694 0.63 +1.9
3,031,862 + Pf1N1B4_2694 0.63 +1.5
3,031,863 - Pf1N1B4_2694 0.64 -1.8
3,031,905 + Pf1N1B4_2694 0.68 +2.9
3,031,905 + Pf1N1B4_2694 0.68 +0.8
3,031,905 + Pf1N1B4_2694 0.68 +2.0
3,031,975 + Pf1N1B4_2694 0.75 +1.6
3,031,975 + Pf1N1B4_2694 0.75 +0.5
3,031,975 + Pf1N1B4_2694 0.75 +2.3
3,031,975 + Pf1N1B4_2694 0.75 +1.2
3,031,975 + Pf1N1B4_2694 0.75 +0.5
3,031,975 + Pf1N1B4_2694 0.75 +2.9
3,031,975 + Pf1N1B4_2694 0.75 +2.5
3,031,975 + Pf1N1B4_2694 0.75 +0.2
3,031,976 - Pf1N1B4_2694 0.75 -0.2
3,031,976 - Pf1N1B4_2694 0.75 +1.7
3,032,069 + Pf1N1B4_2694 0.84 +2.2
3,032,069 + Pf1N1B4_2694 0.84 +2.0
3,032,069 + Pf1N1B4_2694 0.84 +1.7
3,032,069 + Pf1N1B4_2694 0.84 +1.0
3,032,069 + Pf1N1B4_2694 0.84 +1.0
3,032,069 + Pf1N1B4_2694 0.84 +2.2
3,032,115 + Pf1N1B4_2694 0.88 +3.4
3,032,156 + +1.9
3,032,156 + +1.6
3,032,156 + +1.6
3,032,156 + +2.3
3,032,156 + +1.7
3,032,172 + +1.6
3,032,172 + +1.7
3,032,172 + +1.7
3,032,172 + +1.9
3,032,172 + +2.7
3,032,172 + +1.0
3,032,172 + +2.3
3,032,172 + +0.6
3,032,172 + +3.4
3,032,185 + -0.8
3,032,185 + +1.9
3,032,185 + +2.5
3,032,185 + +1.7
3,032,185 + +0.9
3,032,185 + +2.4
3,032,185 + +1.6
3,032,185 + -0.6
3,032,185 + +1.4
3,032,185 + +1.4
3,032,229 + +3.2
3,032,229 + +1.9
3,032,229 + +1.8
3,032,229 + +0.5
3,032,229 + -0.2
3,032,229 + -0.6
3,032,245 + +0.3
3,032,245 + +0.9
3,032,245 + +2.2
3,032,881 + Pf1N1B4_2695 0.64 +0.2
3,032,997 + Pf1N1B4_2695 0.75 -1.1
3,032,997 + Pf1N1B4_2695 0.75 +2.2
3,033,014 + Pf1N1B4_2695 0.77 +1.4
3,033,014 + Pf1N1B4_2695 0.77 +1.2

Or see this region's nucleotide sequence