Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2612

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2611 and Pf1N1B4_2612 are separated by 191 nucleotidesPf1N1B4_2612 and Pf1N1B4_2613 are separated by 9 nucleotidesPf1N1B4_2613 and Pf1N1B4_2614 are separated by 69 nucleotides Pf1N1B4_2611 - Excinuclease ABC subunit A, at 2,949,038 to 2,951,872 _2611 Pf1N1B4_2612 - Putative transport protein, at 2,952,064 to 2,953,461 _2612 Pf1N1B4_2613 - Single-stranded DNA-binding protein, at 2,953,471 to 2,953,992 _2613 Pf1N1B4_2614 - FIG00963002: hypothetical protein, at 2,954,062 to 2,956,266 _2614 Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2951.348 kb on + strand, within Pf1N1B4_2611at 2951.348 kb on + strand, within Pf1N1B4_2611at 2951.349 kb on - strand, within Pf1N1B4_2611at 2951.538 kb on + strand, within Pf1N1B4_2611at 2951.539 kb on - strand, within Pf1N1B4_2611at 2951.553 kb on + strand, within Pf1N1B4_2611at 2951.553 kb on + strand, within Pf1N1B4_2611at 2951.553 kb on + strand, within Pf1N1B4_2611at 2951.554 kb on - strand, within Pf1N1B4_2611at 2951.559 kb on + strand, within Pf1N1B4_2611at 2951.559 kb on + strand, within Pf1N1B4_2611at 2951.559 kb on + strand, within Pf1N1B4_2611at 2951.559 kb on + strand, within Pf1N1B4_2611at 2951.560 kb on - strand, within Pf1N1B4_2611at 2951.694 kb on + strandat 2951.715 kb on + strandat 2951.736 kb on + strandat 2951.736 kb on + strandat 2951.903 kb on + strandat 2951.903 kb on + strandat 2951.904 kb on - strandat 2951.904 kb on - strandat 2951.909 kb on + strandat 2951.909 kb on + strandat 2951.909 kb on + strandat 2951.909 kb on + strandat 2951.909 kb on + strandat 2951.909 kb on + strandat 2951.910 kb on - strandat 2951.910 kb on - strandat 2951.910 kb on - strandat 2951.910 kb on - strandat 2951.911 kb on + strandat 2951.921 kb on + strandat 2951.922 kb on - strandat 2951.995 kb on - strandat 2951.995 kb on - strandat 2951.995 kb on - strandat 2952.007 kb on + strandat 2952.007 kb on + strandat 2952.007 kb on + strandat 2952.007 kb on + strandat 2952.008 kb on - strandat 2952.031 kb on + strandat 2952.031 kb on + strandat 2952.144 kb on + strandat 2952.184 kb on + strandat 2952.185 kb on - strandat 2952.316 kb on + strand, within Pf1N1B4_2612at 2952.533 kb on + strand, within Pf1N1B4_2612at 2952.533 kb on + strand, within Pf1N1B4_2612at 2952.832 kb on + strand, within Pf1N1B4_2612at 2952.880 kb on - strand, within Pf1N1B4_2612at 2952.883 kb on + strand, within Pf1N1B4_2612at 2952.884 kb on - strand, within Pf1N1B4_2612at 2952.953 kb on + strandat 2953.102 kb on + strand, within Pf1N1B4_2612at 2953.103 kb on - strand, within Pf1N1B4_2612at 2953.184 kb on + strand, within Pf1N1B4_2612at 2953.252 kb on + strand, within Pf1N1B4_2612at 2953.252 kb on + strand, within Pf1N1B4_2612at 2953.252 kb on + strand, within Pf1N1B4_2612at 2953.252 kb on + strand, within Pf1N1B4_2612at 2953.375 kb on + strandat 2954.012 kb on + strandat 2954.012 kb on + strandat 2954.013 kb on - strandat 2954.061 kb on - strandat 2954.071 kb on + strandat 2954.072 kb on - strandat 2954.111 kb on + strandat 2954.111 kb on + strandat 2954.111 kb on + strandat 2954.112 kb on - strandat 2954.112 kb on - strandat 2954.112 kb on - strandat 2954.112 kb on - strandat 2954.115 kb on + strandat 2954.115 kb on + strandat 2954.115 kb on + strandat 2954.115 kb on + strandat 2954.116 kb on - strandat 2954.116 kb on - strandat 2954.116 kb on - strandat 2954.116 kb on - strandat 2954.258 kb on + strandat 2954.259 kb on - strandat 2954.319 kb on - strand, within Pf1N1B4_2614at 2954.351 kb on + strand, within Pf1N1B4_2614at 2954.352 kb on - strand, within Pf1N1B4_2614at 2954.408 kb on + strand, within Pf1N1B4_2614at 2954.409 kb on - strand, within Pf1N1B4_2614at 2954.409 kb on - strand, within Pf1N1B4_2614

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,951,348 + Pf1N1B4_2611 0.81 -0.8
2,951,348 + Pf1N1B4_2611 0.81 -1.8
2,951,349 - Pf1N1B4_2611 0.82 -1.4
2,951,538 + Pf1N1B4_2611 0.88 -2.1
2,951,539 - Pf1N1B4_2611 0.88 -2.4
2,951,553 + Pf1N1B4_2611 0.89 -1.8
2,951,553 + Pf1N1B4_2611 0.89 -4.0
2,951,553 + Pf1N1B4_2611 0.89 -0.8
2,951,554 - Pf1N1B4_2611 0.89 -2.1
2,951,559 + Pf1N1B4_2611 0.89 -2.8
2,951,559 + Pf1N1B4_2611 0.89 -1.6
2,951,559 + Pf1N1B4_2611 0.89 -1.8
2,951,559 + Pf1N1B4_2611 0.89 -1.4
2,951,560 - Pf1N1B4_2611 0.89 -2.8
2,951,694 + -2.6
2,951,715 + -2.1
2,951,736 + -2.4
2,951,736 + -1.8
2,951,903 + -1.4
2,951,903 + -2.1
2,951,904 - +0.2
2,951,904 - +0.2
2,951,909 + -1.4
2,951,909 + -1.4
2,951,909 + +0.4
2,951,909 + -3.6
2,951,909 + -1.4
2,951,909 + -1.5
2,951,910 - -0.2
2,951,910 - +0.8
2,951,910 - +0.2
2,951,910 - +0.2
2,951,911 + +0.6
2,951,921 + -1.4
2,951,922 - -0.3
2,951,995 - +2.0
2,951,995 - +1.4
2,951,995 - +0.5
2,952,007 + -0.9
2,952,007 + -2.4
2,952,007 + +0.2
2,952,007 + -2.6
2,952,008 - +0.1
2,952,031 + -0.1
2,952,031 + +1.2
2,952,144 + -1.5
2,952,184 + +0.2
2,952,185 - -2.1
2,952,316 + Pf1N1B4_2612 0.18 -0.8
2,952,533 + Pf1N1B4_2612 0.34 -1.4
2,952,533 + Pf1N1B4_2612 0.34 -1.8
2,952,832 + Pf1N1B4_2612 0.55 -1.4
2,952,880 - Pf1N1B4_2612 0.58 -2.8
2,952,883 + Pf1N1B4_2612 0.59 -0.4
2,952,884 - Pf1N1B4_2612 0.59 -2.4
2,952,953 + -1.4
2,953,102 + Pf1N1B4_2612 0.74 -1.8
2,953,103 - Pf1N1B4_2612 0.74 -0.2
2,953,184 + Pf1N1B4_2612 0.80 -2.1
2,953,252 + Pf1N1B4_2612 0.85 +1.5
2,953,252 + Pf1N1B4_2612 0.85 +1.2
2,953,252 + Pf1N1B4_2612 0.85 +0.2
2,953,252 + Pf1N1B4_2612 0.85 -0.8
2,953,375 + +1.5
2,954,012 + -1.8
2,954,012 + +0.2
2,954,013 - -2.8
2,954,061 - -0.2
2,954,071 + +0.2
2,954,072 - -0.4
2,954,111 + +1.6
2,954,111 + +1.2
2,954,111 + +3.4
2,954,112 - +1.2
2,954,112 - -2.4
2,954,112 - -0.6
2,954,112 - -2.0
2,954,115 + +1.5
2,954,115 + +1.5
2,954,115 + -2.1
2,954,115 + -0.1
2,954,116 - +0.9
2,954,116 - +1.6
2,954,116 - -1.8
2,954,116 - +2.8
2,954,258 + -1.8
2,954,259 - +1.1
2,954,319 - Pf1N1B4_2614 0.12 +1.6
2,954,351 + Pf1N1B4_2614 0.13 +0.2
2,954,352 - Pf1N1B4_2614 0.13 +2.5
2,954,408 + Pf1N1B4_2614 0.16 -0.6
2,954,409 - Pf1N1B4_2614 0.16 -2.1
2,954,409 - Pf1N1B4_2614 0.16 +1.1

Or see this region's nucleotide sequence