Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2412

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2411 and Pf1N1B4_2412 are separated by 131 nucleotidesPf1N1B4_2412 and Pf1N1B4_2413 are separated by 183 nucleotides Pf1N1B4_2411 - FIG00953568: hypothetical protein, at 2,731,030 to 2,732,208 _2411 Pf1N1B4_2412 - ATP-dependent 23S rRNA helicase DbpA, at 2,732,340 to 2,733,725 _2412 Pf1N1B4_2413 - Permeases of the major facilitator superfamily, at 2,733,909 to 2,735,336 _2413 Position (kb) 2732 2733 2734Strain fitness (log2 ratio) -3 -2 -1 0 1at 2731.980 kb on - strand, within Pf1N1B4_2411at 2732.379 kb on - strandat 2732.434 kb on + strandat 2732.435 kb on - strandat 2732.435 kb on - strandat 2732.435 kb on - strandat 2732.527 kb on - strand, within Pf1N1B4_2412at 2732.527 kb on - strand, within Pf1N1B4_2412at 2732.527 kb on - strand, within Pf1N1B4_2412at 2732.527 kb on - strand, within Pf1N1B4_2412at 2732.792 kb on + strand, within Pf1N1B4_2412at 2732.843 kb on + strandat 2732.844 kb on - strand, within Pf1N1B4_2412at 2732.844 kb on - strand, within Pf1N1B4_2412at 2732.869 kb on - strand, within Pf1N1B4_2412at 2733.055 kb on + strand, within Pf1N1B4_2412at 2733.055 kb on + strand, within Pf1N1B4_2412at 2733.055 kb on + strand, within Pf1N1B4_2412at 2733.056 kb on - strand, within Pf1N1B4_2412at 2733.227 kb on - strand, within Pf1N1B4_2412at 2733.698 kb on + strandat 2733.698 kb on + strandat 2733.701 kb on + strandat 2733.701 kb on + strandat 2733.702 kb on - strandat 2733.702 kb on - strandat 2733.702 kb on - strandat 2733.760 kb on + strandat 2733.760 kb on + strandat 2733.760 kb on + strandat 2733.761 kb on - strandat 2733.761 kb on - strandat 2733.790 kb on - strandat 2733.800 kb on - strandat 2733.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,731,980 - Pf1N1B4_2411 0.81 +0.1
2,732,379 - -1.3
2,732,434 + -1.3
2,732,435 - -1.7
2,732,435 - -1.3
2,732,435 - -2.7
2,732,527 - Pf1N1B4_2412 0.13 -0.7
2,732,527 - Pf1N1B4_2412 0.13 -2.3
2,732,527 - Pf1N1B4_2412 0.13 +0.8
2,732,527 - Pf1N1B4_2412 0.13 -0.7
2,732,792 + Pf1N1B4_2412 0.33 -3.1
2,732,843 + +0.7
2,732,844 - Pf1N1B4_2412 0.36 -1.3
2,732,844 - Pf1N1B4_2412 0.36 -1.3
2,732,869 - Pf1N1B4_2412 0.38 -3.1
2,733,055 + Pf1N1B4_2412 0.52 +1.3
2,733,055 + Pf1N1B4_2412 0.52 -1.1
2,733,055 + Pf1N1B4_2412 0.52 +0.3
2,733,056 - Pf1N1B4_2412 0.52 -0.5
2,733,227 - Pf1N1B4_2412 0.64 -1.7
2,733,698 + -1.3
2,733,698 + -2.3
2,733,701 + -1.5
2,733,701 + -2.7
2,733,702 - -3.3
2,733,702 - -1.5
2,733,702 - -2.3
2,733,760 + -2.7
2,733,760 + -2.5
2,733,760 + -3.5
2,733,761 - -2.1
2,733,761 - -1.1
2,733,790 - +0.3
2,733,800 - -1.5
2,733,807 - -2.1

Or see this region's nucleotide sequence