Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2084 and Pf1N1B4_2085 are separated by 14 nucleotides
Pf1N1B4_2084 - Uncharacterized protein ImpC, at 2,384,596 to 2,386,071
_2084
Pf1N1B4_2085 - Uncharacterized protein similar to VCA0109, at 2,386,086 to 2,386,493
_2085
Position (kb)
2386
2387 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2385.121 kb on + strand, within Pf1N1B4_2084 at 2385.121 kb on + strand, within Pf1N1B4_2084 at 2385.121 kb on + strand, within Pf1N1B4_2084 at 2385.122 kb on - strand, within Pf1N1B4_2084 at 2385.122 kb on - strand, within Pf1N1B4_2084 at 2385.122 kb on - strand, within Pf1N1B4_2084 at 2385.122 kb on - strand at 2385.122 kb on - strand, within Pf1N1B4_2084 at 2385.122 kb on - strand, within Pf1N1B4_2084 at 2385.373 kb on + strand, within Pf1N1B4_2084 at 2385.374 kb on - strand, within Pf1N1B4_2084 at 2385.374 kb on - strand, within Pf1N1B4_2084 at 2385.406 kb on + strand, within Pf1N1B4_2084 at 2385.406 kb on + strand, within Pf1N1B4_2084 at 2385.406 kb on + strand, within Pf1N1B4_2084 at 2385.406 kb on + strand, within Pf1N1B4_2084 at 2385.407 kb on - strand, within Pf1N1B4_2084 at 2385.407 kb on - strand, within Pf1N1B4_2084 at 2385.407 kb on - strand, within Pf1N1B4_2084 at 2385.428 kb on - strand, within Pf1N1B4_2084 at 2385.578 kb on + strand, within Pf1N1B4_2084 at 2385.578 kb on + strand, within Pf1N1B4_2084 at 2385.578 kb on + strand, within Pf1N1B4_2084 at 2385.578 kb on + strand, within Pf1N1B4_2084 at 2385.579 kb on - strand, within Pf1N1B4_2084 at 2385.601 kb on + strand, within Pf1N1B4_2084 at 2385.739 kb on + strand, within Pf1N1B4_2084 at 2385.739 kb on + strand, within Pf1N1B4_2084 at 2385.740 kb on - strand, within Pf1N1B4_2084 at 2385.740 kb on - strand, within Pf1N1B4_2084 at 2385.740 kb on - strand, within Pf1N1B4_2084 at 2385.740 kb on - strand, within Pf1N1B4_2084 at 2385.740 kb on - strand, within Pf1N1B4_2084 at 2385.740 kb on - strand, within Pf1N1B4_2084 at 2385.763 kb on + strand, within Pf1N1B4_2084 at 2385.763 kb on + strand, within Pf1N1B4_2084 at 2385.764 kb on - strand, within Pf1N1B4_2084 at 2385.764 kb on - strand, within Pf1N1B4_2084 at 2385.764 kb on - strand, within Pf1N1B4_2084 at 2385.764 kb on - strand, within Pf1N1B4_2084 at 2385.764 kb on - strand, within Pf1N1B4_2084 at 2385.793 kb on + strand, within Pf1N1B4_2084 at 2385.794 kb on - strand, within Pf1N1B4_2084 at 2385.794 kb on - strand, within Pf1N1B4_2084 at 2385.794 kb on - strand, within Pf1N1B4_2084 at 2385.841 kb on - strand, within Pf1N1B4_2084 at 2386.018 kb on + strand at 2386.018 kb on + strand at 2386.018 kb on + strand at 2386.018 kb on + strand at 2386.018 kb on + strand at 2386.018 kb on + strand at 2386.018 kb on + strand at 2386.019 kb on - strand at 2386.019 kb on - strand at 2386.019 kb on - strand at 2386.069 kb on + strand at 2386.329 kb on + strand, within Pf1N1B4_2085 at 2386.329 kb on + strand, within Pf1N1B4_2085 at 2386.330 kb on - strand, within Pf1N1B4_2085 at 2386.480 kb on + strand at 2386.481 kb on - strand at 2386.481 kb on - strand at 2386.481 kb on - strand at 2386.481 kb on - strand at 2386.481 kb on - strand at 2386.492 kb on - strand at 2386.492 kb on - strand at 2386.800 kb on - strand at 2386.800 kb on - strand at 2386.889 kb on - strand at 2386.941 kb on + strand at 2387.163 kb on - strand at 2387.253 kb on + strand at 2387.254 kb on - strand at 2387.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 2,385,121 + Pf1N1B4_2084 0.36 -0.4 2,385,121 + Pf1N1B4_2084 0.36 +3.1 2,385,121 + Pf1N1B4_2084 0.36 -1.2 2,385,122 - Pf1N1B4_2084 0.36 +2.1 2,385,122 - Pf1N1B4_2084 0.36 +1.9 2,385,122 - Pf1N1B4_2084 0.36 +0.0 2,385,122 - -0.7 2,385,122 - Pf1N1B4_2084 0.36 +1.3 2,385,122 - Pf1N1B4_2084 0.36 -0.4 2,385,373 + Pf1N1B4_2084 0.53 -0.9 2,385,374 - Pf1N1B4_2084 0.53 +0.8 2,385,374 - Pf1N1B4_2084 0.53 -1.2 2,385,406 + Pf1N1B4_2084 0.55 -0.1 2,385,406 + Pf1N1B4_2084 0.55 +1.8 2,385,406 + Pf1N1B4_2084 0.55 +0.1 2,385,406 + Pf1N1B4_2084 0.55 -0.6 2,385,407 - Pf1N1B4_2084 0.55 -0.1 2,385,407 - Pf1N1B4_2084 0.55 -1.2 2,385,407 - Pf1N1B4_2084 0.55 +1.7 2,385,428 - Pf1N1B4_2084 0.56 +1.2 2,385,578 + Pf1N1B4_2084 0.67 -2.0 2,385,578 + Pf1N1B4_2084 0.67 -1.7 2,385,578 + Pf1N1B4_2084 0.67 +0.6 2,385,578 + Pf1N1B4_2084 0.67 +0.3 2,385,579 - Pf1N1B4_2084 0.67 -0.2 2,385,601 + Pf1N1B4_2084 0.68 +0.3 2,385,739 + Pf1N1B4_2084 0.77 -0.9 2,385,739 + Pf1N1B4_2084 0.77 +0.3 2,385,740 - Pf1N1B4_2084 0.78 -0.4 2,385,740 - Pf1N1B4_2084 0.78 -0.9 2,385,740 - Pf1N1B4_2084 0.78 +0.0 2,385,740 - Pf1N1B4_2084 0.78 -1.7 2,385,740 - Pf1N1B4_2084 0.78 +0.1 2,385,740 - Pf1N1B4_2084 0.78 -0.3 2,385,763 + Pf1N1B4_2084 0.79 -2.7 2,385,763 + Pf1N1B4_2084 0.79 -2.0 2,385,764 - Pf1N1B4_2084 0.79 +0.3 2,385,764 - Pf1N1B4_2084 0.79 -2.0 2,385,764 - Pf1N1B4_2084 0.79 -3.1 2,385,764 - Pf1N1B4_2084 0.79 +0.1 2,385,764 - Pf1N1B4_2084 0.79 -1.2 2,385,793 + Pf1N1B4_2084 0.81 -0.7 2,385,794 - Pf1N1B4_2084 0.81 -0.7 2,385,794 - Pf1N1B4_2084 0.81 -2.7 2,385,794 - Pf1N1B4_2084 0.81 +0.5 2,385,841 - Pf1N1B4_2084 0.84 +0.9 2,386,018 + +0.7 2,386,018 + -3.1 2,386,018 + -0.4 2,386,018 + -0.1 2,386,018 + -0.7 2,386,018 + -0.3 2,386,018 + -1.7 2,386,019 - -2.2 2,386,019 - +1.3 2,386,019 - -0.2 2,386,069 + +1.9 2,386,329 + Pf1N1B4_2085 0.60 -1.2 2,386,329 + Pf1N1B4_2085 0.60 -1.7 2,386,330 - Pf1N1B4_2085 0.60 -1.3 2,386,480 + +1.3 2,386,481 - -0.7 2,386,481 - +0.8 2,386,481 - -1.7 2,386,481 - -0.3 2,386,481 - +1.3 2,386,492 - -0.3 2,386,492 - +0.3 2,386,800 - +0.3 2,386,800 - +0.6 2,386,889 - +1.5 2,386,941 + +0.1 2,387,163 - +3.3 2,387,253 + +0.1 2,387,254 - +0.3 2,387,463 + -2.0
Or see this region's nucleotide sequence