Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2085

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2084 and Pf1N1B4_2085 are separated by 14 nucleotides Pf1N1B4_2084 - Uncharacterized protein ImpC, at 2,384,596 to 2,386,071 _2084 Pf1N1B4_2085 - Uncharacterized protein similar to VCA0109, at 2,386,086 to 2,386,493 _2085 Position (kb) 2386 2387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2385.121 kb on + strand, within Pf1N1B4_2084at 2385.121 kb on + strand, within Pf1N1B4_2084at 2385.121 kb on + strand, within Pf1N1B4_2084at 2385.122 kb on - strand, within Pf1N1B4_2084at 2385.122 kb on - strand, within Pf1N1B4_2084at 2385.122 kb on - strand, within Pf1N1B4_2084at 2385.122 kb on - strandat 2385.122 kb on - strand, within Pf1N1B4_2084at 2385.122 kb on - strand, within Pf1N1B4_2084at 2385.373 kb on + strand, within Pf1N1B4_2084at 2385.374 kb on - strand, within Pf1N1B4_2084at 2385.374 kb on - strand, within Pf1N1B4_2084at 2385.406 kb on + strand, within Pf1N1B4_2084at 2385.406 kb on + strand, within Pf1N1B4_2084at 2385.406 kb on + strand, within Pf1N1B4_2084at 2385.406 kb on + strand, within Pf1N1B4_2084at 2385.407 kb on - strand, within Pf1N1B4_2084at 2385.407 kb on - strand, within Pf1N1B4_2084at 2385.407 kb on - strand, within Pf1N1B4_2084at 2385.428 kb on - strand, within Pf1N1B4_2084at 2385.578 kb on + strand, within Pf1N1B4_2084at 2385.578 kb on + strand, within Pf1N1B4_2084at 2385.578 kb on + strand, within Pf1N1B4_2084at 2385.578 kb on + strand, within Pf1N1B4_2084at 2385.579 kb on - strand, within Pf1N1B4_2084at 2385.601 kb on + strand, within Pf1N1B4_2084at 2385.739 kb on + strand, within Pf1N1B4_2084at 2385.739 kb on + strand, within Pf1N1B4_2084at 2385.740 kb on - strand, within Pf1N1B4_2084at 2385.740 kb on - strand, within Pf1N1B4_2084at 2385.740 kb on - strand, within Pf1N1B4_2084at 2385.740 kb on - strand, within Pf1N1B4_2084at 2385.740 kb on - strand, within Pf1N1B4_2084at 2385.740 kb on - strand, within Pf1N1B4_2084at 2385.763 kb on + strand, within Pf1N1B4_2084at 2385.763 kb on + strand, within Pf1N1B4_2084at 2385.764 kb on - strand, within Pf1N1B4_2084at 2385.764 kb on - strand, within Pf1N1B4_2084at 2385.764 kb on - strand, within Pf1N1B4_2084at 2385.764 kb on - strand, within Pf1N1B4_2084at 2385.764 kb on - strand, within Pf1N1B4_2084at 2385.793 kb on + strand, within Pf1N1B4_2084at 2385.794 kb on - strand, within Pf1N1B4_2084at 2385.794 kb on - strand, within Pf1N1B4_2084at 2385.794 kb on - strand, within Pf1N1B4_2084at 2385.841 kb on - strand, within Pf1N1B4_2084at 2386.018 kb on + strandat 2386.018 kb on + strandat 2386.018 kb on + strandat 2386.018 kb on + strandat 2386.018 kb on + strandat 2386.018 kb on + strandat 2386.018 kb on + strandat 2386.019 kb on - strandat 2386.019 kb on - strandat 2386.019 kb on - strandat 2386.069 kb on + strandat 2386.329 kb on + strand, within Pf1N1B4_2085at 2386.329 kb on + strand, within Pf1N1B4_2085at 2386.330 kb on - strand, within Pf1N1B4_2085at 2386.480 kb on + strandat 2386.481 kb on - strandat 2386.481 kb on - strandat 2386.481 kb on - strandat 2386.481 kb on - strandat 2386.481 kb on - strandat 2386.492 kb on - strandat 2386.492 kb on - strandat 2386.800 kb on - strandat 2386.800 kb on - strandat 2386.889 kb on - strandat 2386.941 kb on + strandat 2387.163 kb on - strandat 2387.253 kb on + strandat 2387.254 kb on - strandat 2387.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,385,121 + Pf1N1B4_2084 0.36 -0.4
2,385,121 + Pf1N1B4_2084 0.36 +3.1
2,385,121 + Pf1N1B4_2084 0.36 -1.2
2,385,122 - Pf1N1B4_2084 0.36 +2.1
2,385,122 - Pf1N1B4_2084 0.36 +1.9
2,385,122 - Pf1N1B4_2084 0.36 +0.0
2,385,122 - -0.7
2,385,122 - Pf1N1B4_2084 0.36 +1.3
2,385,122 - Pf1N1B4_2084 0.36 -0.4
2,385,373 + Pf1N1B4_2084 0.53 -0.9
2,385,374 - Pf1N1B4_2084 0.53 +0.8
2,385,374 - Pf1N1B4_2084 0.53 -1.2
2,385,406 + Pf1N1B4_2084 0.55 -0.1
2,385,406 + Pf1N1B4_2084 0.55 +1.8
2,385,406 + Pf1N1B4_2084 0.55 +0.1
2,385,406 + Pf1N1B4_2084 0.55 -0.6
2,385,407 - Pf1N1B4_2084 0.55 -0.1
2,385,407 - Pf1N1B4_2084 0.55 -1.2
2,385,407 - Pf1N1B4_2084 0.55 +1.7
2,385,428 - Pf1N1B4_2084 0.56 +1.2
2,385,578 + Pf1N1B4_2084 0.67 -2.0
2,385,578 + Pf1N1B4_2084 0.67 -1.7
2,385,578 + Pf1N1B4_2084 0.67 +0.6
2,385,578 + Pf1N1B4_2084 0.67 +0.3
2,385,579 - Pf1N1B4_2084 0.67 -0.2
2,385,601 + Pf1N1B4_2084 0.68 +0.3
2,385,739 + Pf1N1B4_2084 0.77 -0.9
2,385,739 + Pf1N1B4_2084 0.77 +0.3
2,385,740 - Pf1N1B4_2084 0.78 -0.4
2,385,740 - Pf1N1B4_2084 0.78 -0.9
2,385,740 - Pf1N1B4_2084 0.78 +0.0
2,385,740 - Pf1N1B4_2084 0.78 -1.7
2,385,740 - Pf1N1B4_2084 0.78 +0.1
2,385,740 - Pf1N1B4_2084 0.78 -0.3
2,385,763 + Pf1N1B4_2084 0.79 -2.7
2,385,763 + Pf1N1B4_2084 0.79 -2.0
2,385,764 - Pf1N1B4_2084 0.79 +0.3
2,385,764 - Pf1N1B4_2084 0.79 -2.0
2,385,764 - Pf1N1B4_2084 0.79 -3.1
2,385,764 - Pf1N1B4_2084 0.79 +0.1
2,385,764 - Pf1N1B4_2084 0.79 -1.2
2,385,793 + Pf1N1B4_2084 0.81 -0.7
2,385,794 - Pf1N1B4_2084 0.81 -0.7
2,385,794 - Pf1N1B4_2084 0.81 -2.7
2,385,794 - Pf1N1B4_2084 0.81 +0.5
2,385,841 - Pf1N1B4_2084 0.84 +0.9
2,386,018 + +0.7
2,386,018 + -3.1
2,386,018 + -0.4
2,386,018 + -0.1
2,386,018 + -0.7
2,386,018 + -0.3
2,386,018 + -1.7
2,386,019 - -2.2
2,386,019 - +1.3
2,386,019 - -0.2
2,386,069 + +1.9
2,386,329 + Pf1N1B4_2085 0.60 -1.2
2,386,329 + Pf1N1B4_2085 0.60 -1.7
2,386,330 - Pf1N1B4_2085 0.60 -1.3
2,386,480 + +1.3
2,386,481 - -0.7
2,386,481 - +0.8
2,386,481 - -1.7
2,386,481 - -0.3
2,386,481 - +1.3
2,386,492 - -0.3
2,386,492 - +0.3
2,386,800 - +0.3
2,386,800 - +0.6
2,386,889 - +1.5
2,386,941 + +0.1
2,387,163 - +3.3
2,387,253 + +0.1
2,387,254 - +0.3
2,387,463 + -2.0

Or see this region's nucleotide sequence