Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1928

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1927 and Pf1N1B4_1928 are separated by 20 nucleotidesPf1N1B4_1928 and Pf1N1B4_1929 are separated by 39 nucleotides Pf1N1B4_1927 - DNA recombination and repair protein RecF, at 2,204,603 to 2,205,706 _1927 Pf1N1B4_1928 - DNA polymerase III beta subunit (EC 2.7.7.7), at 2,205,727 to 2,206,830 _1928 Pf1N1B4_1929 - Chromosomal replication initiator protein DnaA, at 2,206,870 to 2,208,384 _1929 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 2204.733 kb on - strand, within Pf1N1B4_1927at 2204.733 kb on - strand, within Pf1N1B4_1927at 2204.733 kb on - strand, within Pf1N1B4_1927at 2204.806 kb on - strand, within Pf1N1B4_1927at 2204.806 kb on - strand, within Pf1N1B4_1927at 2204.806 kb on - strand, within Pf1N1B4_1927at 2204.806 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.810 kb on - strand, within Pf1N1B4_1927at 2204.912 kb on - strand, within Pf1N1B4_1927at 2204.912 kb on - strand, within Pf1N1B4_1927at 2204.912 kb on - strand, within Pf1N1B4_1927at 2204.927 kb on - strand, within Pf1N1B4_1927at 2205.043 kb on - strand, within Pf1N1B4_1927at 2205.043 kb on - strand, within Pf1N1B4_1927at 2205.043 kb on - strand, within Pf1N1B4_1927at 2205.043 kb on - strand, within Pf1N1B4_1927at 2205.118 kb on - strand, within Pf1N1B4_1927at 2205.118 kb on - strand, within Pf1N1B4_1927at 2205.118 kb on - strand, within Pf1N1B4_1927at 2205.118 kb on - strand, within Pf1N1B4_1927at 2205.118 kb on - strand, within Pf1N1B4_1927at 2205.138 kb on - strand, within Pf1N1B4_1927at 2205.138 kb on - strand, within Pf1N1B4_1927at 2205.200 kb on - strand, within Pf1N1B4_1927at 2205.449 kb on + strand, within Pf1N1B4_1927at 2205.449 kb on + strand, within Pf1N1B4_1927at 2205.449 kb on + strand, within Pf1N1B4_1927at 2205.502 kb on + strand, within Pf1N1B4_1927at 2205.502 kb on + strand, within Pf1N1B4_1927at 2205.503 kb on - strand, within Pf1N1B4_1927at 2205.503 kb on - strand, within Pf1N1B4_1927at 2205.503 kb on - strand, within Pf1N1B4_1927at 2205.503 kb on - strand, within Pf1N1B4_1927at 2205.503 kb on - strand, within Pf1N1B4_1927at 2205.503 kb on - strand, within Pf1N1B4_1927at 2205.534 kb on - strand, within Pf1N1B4_1927at 2205.536 kb on + strand, within Pf1N1B4_1927at 2205.536 kb on + strand, within Pf1N1B4_1927at 2205.536 kb on + strand, within Pf1N1B4_1927at 2205.537 kb on - strand, within Pf1N1B4_1927at 2205.547 kb on + strand, within Pf1N1B4_1927at 2205.698 kb on + strandat 2205.698 kb on + strandat 2205.698 kb on + strandat 2205.698 kb on + strandat 2205.698 kb on + strandat 2205.698 kb on + strandat 2205.698 kb on + strandat 2205.699 kb on - strandat 2205.699 kb on - strandat 2205.699 kb on - strandat 2205.699 kb on - strandat 2205.699 kb on - strandat 2205.699 kb on - strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.708 kb on + strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.709 kb on - strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.724 kb on + strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.725 kb on - strandat 2205.728 kb on + strandat 2205.728 kb on + strandat 2205.728 kb on + strandat 2205.728 kb on + strandat 2205.728 kb on + strandat 2205.728 kb on + strandat 2205.728 kb on + strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2205.729 kb on - strandat 2206.849 kb on - strandat 2206.852 kb on - strandat 2206.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,204,733 - Pf1N1B4_1927 0.12 -1.6
2,204,733 - Pf1N1B4_1927 0.12 -2.4
2,204,733 - Pf1N1B4_1927 0.12 -1.6
2,204,806 - Pf1N1B4_1927 0.18 -3.4
2,204,806 - Pf1N1B4_1927 0.18 -1.6
2,204,806 - Pf1N1B4_1927 0.18 -1.2
2,204,806 - Pf1N1B4_1927 0.18 -1.2
2,204,810 - Pf1N1B4_1927 0.19 -1.6
2,204,810 - Pf1N1B4_1927 0.19 -2.6
2,204,810 - Pf1N1B4_1927 0.19 -2.2
2,204,810 - Pf1N1B4_1927 0.19 -1.9
2,204,810 - Pf1N1B4_1927 0.19 -3.2
2,204,810 - Pf1N1B4_1927 0.19 -3.3
2,204,810 - Pf1N1B4_1927 0.19 -1.6
2,204,810 - Pf1N1B4_1927 0.19 -1.6
2,204,912 - Pf1N1B4_1927 0.28 -2.2
2,204,912 - Pf1N1B4_1927 0.28 -3.8
2,204,912 - Pf1N1B4_1927 0.28 -3.0
2,204,927 - Pf1N1B4_1927 0.29 -2.6
2,205,043 - Pf1N1B4_1927 0.40 -1.2
2,205,043 - Pf1N1B4_1927 0.40 -2.4
2,205,043 - Pf1N1B4_1927 0.40 +0.4
2,205,043 - Pf1N1B4_1927 0.40 +0.4
2,205,118 - Pf1N1B4_1927 0.47 +0.4
2,205,118 - Pf1N1B4_1927 0.47 -2.4
2,205,118 - Pf1N1B4_1927 0.47 -1.7
2,205,118 - Pf1N1B4_1927 0.47 +0.4
2,205,118 - Pf1N1B4_1927 0.47 -1.2
2,205,138 - Pf1N1B4_1927 0.48 -2.2
2,205,138 - Pf1N1B4_1927 0.48 -0.6
2,205,200 - Pf1N1B4_1927 0.54 -0.8
2,205,449 + Pf1N1B4_1927 0.77 -1.6
2,205,449 + Pf1N1B4_1927 0.77 -1.4
2,205,449 + Pf1N1B4_1927 0.77 -2.2
2,205,502 + Pf1N1B4_1927 0.81 -1.7
2,205,502 + Pf1N1B4_1927 0.81 -2.2
2,205,503 - Pf1N1B4_1927 0.82 -1.2
2,205,503 - Pf1N1B4_1927 0.82 -1.2
2,205,503 - Pf1N1B4_1927 0.82 -1.9
2,205,503 - Pf1N1B4_1927 0.82 -1.6
2,205,503 - Pf1N1B4_1927 0.82 -2.6
2,205,503 - Pf1N1B4_1927 0.82 -1.6
2,205,534 - Pf1N1B4_1927 0.84 -1.4
2,205,536 + Pf1N1B4_1927 0.85 -0.6
2,205,536 + Pf1N1B4_1927 0.85 -0.6
2,205,536 + Pf1N1B4_1927 0.85 -2.4
2,205,537 - Pf1N1B4_1927 0.85 -2.6
2,205,547 + Pf1N1B4_1927 0.86 -2.6
2,205,698 + -1.6
2,205,698 + -0.6
2,205,698 + -3.4
2,205,698 + -1.9
2,205,698 + -2.4
2,205,698 + -0.6
2,205,698 + -0.9
2,205,699 - -4.0
2,205,699 - -2.4
2,205,699 - -1.9
2,205,699 - -1.9
2,205,699 - -1.2
2,205,699 - -1.2
2,205,708 + -1.9
2,205,708 + -1.0
2,205,708 + -0.6
2,205,708 + -1.9
2,205,708 + -6.1
2,205,708 + +0.4
2,205,708 + -5.1
2,205,708 + -1.2
2,205,708 + -2.4
2,205,708 + -0.2
2,205,708 + -1.5
2,205,708 + -2.7
2,205,708 + -2.6
2,205,708 + -2.4
2,205,709 - +0.1
2,205,709 - -1.9
2,205,709 - -1.2
2,205,709 - -1.0
2,205,709 - -2.7
2,205,709 - -1.3
2,205,709 - -1.6
2,205,709 - +0.0
2,205,709 - -2.6
2,205,709 - -1.6
2,205,709 - -1.2
2,205,709 - +1.0
2,205,709 - -0.9
2,205,709 - -2.0
2,205,709 - -0.6
2,205,709 - -0.5
2,205,709 - -1.9
2,205,709 - -0.8
2,205,709 - -1.0
2,205,709 - +1.2
2,205,709 - -2.2
2,205,709 - -1.2
2,205,724 + -3.0
2,205,724 + -3.7
2,205,724 + -2.6
2,205,724 + -3.0
2,205,724 + -1.5
2,205,724 + -0.6
2,205,724 + -0.6
2,205,724 + -1.9
2,205,725 - +1.2
2,205,725 - +1.0
2,205,725 - +2.5
2,205,725 - +1.0
2,205,725 - +2.9
2,205,725 - -0.3
2,205,725 - +3.0
2,205,725 - +0.2
2,205,725 - +2.7
2,205,725 - +3.2
2,205,725 - +1.4
2,205,725 - +1.5
2,205,725 - +1.3
2,205,725 - +2.1
2,205,725 - +1.6
2,205,725 - +3.4
2,205,725 - +1.9
2,205,725 - +2.7
2,205,728 + -2.2
2,205,728 + -0.6
2,205,728 + -0.6
2,205,728 + +0.4
2,205,728 + -3.7
2,205,728 + -4.6
2,205,728 + -1.6
2,205,729 - +0.8
2,205,729 - +1.2
2,205,729 - +1.2
2,205,729 - +0.4
2,205,729 - +2.9
2,205,729 - +0.0
2,205,729 - +3.9
2,205,729 - +2.3
2,205,729 - +1.3
2,205,729 - +2.2
2,206,849 - +2.2
2,206,852 - -1.0
2,206,852 - +0.0

Or see this region's nucleotide sequence