Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1926 and Pf1N1B4_1927 are separated by 44 nucleotides Pf1N1B4_1927 and Pf1N1B4_1928 are separated by 20 nucleotides
Pf1N1B4_1926 - DNA gyrase subunit B (EC 5.99.1.3), at 2,202,180 to 2,204,558
_1926
Pf1N1B4_1927 - DNA recombination and repair protein RecF, at 2,204,603 to 2,205,706
_1927
Pf1N1B4_1928 - DNA polymerase III beta subunit (EC 2.7.7.7), at 2,205,727 to 2,206,830
_1928
Position (kb)
2204
2205
2206 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 2204.694 kb on - strand at 2204.694 kb on - strand at 2204.706 kb on - strand at 2204.706 kb on - strand at 2204.706 kb on - strand at 2204.706 kb on - strand at 2204.706 kb on - strand at 2204.706 kb on - strand at 2204.706 kb on - strand at 2204.714 kb on - strand, within Pf1N1B4_1927 at 2204.714 kb on - strand, within Pf1N1B4_1927 at 2204.714 kb on - strand, within Pf1N1B4_1927 at 2204.714 kb on - strand, within Pf1N1B4_1927 at 2204.717 kb on - strand, within Pf1N1B4_1927 at 2204.717 kb on - strand, within Pf1N1B4_1927 at 2204.717 kb on - strand, within Pf1N1B4_1927 at 2204.717 kb on - strand, within Pf1N1B4_1927 at 2204.733 kb on - strand, within Pf1N1B4_1927 at 2204.733 kb on - strand, within Pf1N1B4_1927 at 2204.733 kb on - strand, within Pf1N1B4_1927 at 2204.806 kb on - strand, within Pf1N1B4_1927 at 2204.806 kb on - strand, within Pf1N1B4_1927 at 2204.806 kb on - strand, within Pf1N1B4_1927 at 2204.806 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.810 kb on - strand, within Pf1N1B4_1927 at 2204.912 kb on - strand, within Pf1N1B4_1927 at 2204.912 kb on - strand, within Pf1N1B4_1927 at 2204.912 kb on - strand, within Pf1N1B4_1927 at 2204.927 kb on - strand, within Pf1N1B4_1927 at 2205.043 kb on - strand, within Pf1N1B4_1927 at 2205.043 kb on - strand, within Pf1N1B4_1927 at 2205.043 kb on - strand, within Pf1N1B4_1927 at 2205.043 kb on - strand, within Pf1N1B4_1927 at 2205.118 kb on - strand, within Pf1N1B4_1927 at 2205.118 kb on - strand, within Pf1N1B4_1927 at 2205.118 kb on - strand, within Pf1N1B4_1927 at 2205.118 kb on - strand, within Pf1N1B4_1927 at 2205.118 kb on - strand, within Pf1N1B4_1927 at 2205.138 kb on - strand, within Pf1N1B4_1927 at 2205.138 kb on - strand, within Pf1N1B4_1927 at 2205.200 kb on - strand, within Pf1N1B4_1927 at 2205.449 kb on + strand, within Pf1N1B4_1927 at 2205.449 kb on + strand, within Pf1N1B4_1927 at 2205.449 kb on + strand, within Pf1N1B4_1927 at 2205.502 kb on + strand, within Pf1N1B4_1927 at 2205.502 kb on + strand, within Pf1N1B4_1927 at 2205.503 kb on - strand, within Pf1N1B4_1927 at 2205.503 kb on - strand, within Pf1N1B4_1927 at 2205.503 kb on - strand, within Pf1N1B4_1927 at 2205.503 kb on - strand, within Pf1N1B4_1927 at 2205.503 kb on - strand, within Pf1N1B4_1927 at 2205.503 kb on - strand, within Pf1N1B4_1927 at 2205.534 kb on - strand, within Pf1N1B4_1927 at 2205.536 kb on + strand, within Pf1N1B4_1927 at 2205.536 kb on + strand, within Pf1N1B4_1927 at 2205.536 kb on + strand, within Pf1N1B4_1927 at 2205.537 kb on - strand, within Pf1N1B4_1927 at 2205.547 kb on + strand, within Pf1N1B4_1927 at 2205.698 kb on + strand at 2205.698 kb on + strand at 2205.698 kb on + strand at 2205.698 kb on + strand at 2205.698 kb on + strand at 2205.698 kb on + strand at 2205.698 kb on + strand at 2205.699 kb on - strand at 2205.699 kb on - strand at 2205.699 kb on - strand at 2205.699 kb on - strand at 2205.699 kb on - strand at 2205.699 kb on - strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.708 kb on + strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.709 kb on - strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.724 kb on + strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.725 kb on - strand at 2205.728 kb on + strand at 2205.728 kb on + strand at 2205.728 kb on + strand at 2205.728 kb on + strand at 2205.728 kb on + strand at 2205.728 kb on + strand at 2205.728 kb on + strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand at 2205.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 2,204,694 - -3.7 2,204,694 - -1.6 2,204,706 - -2.9 2,204,706 - -2.2 2,204,706 - -0.6 2,204,706 - +0.4 2,204,706 - -2.2 2,204,706 - -2.7 2,204,706 - +0.4 2,204,714 - Pf1N1B4_1927 0.10 -1.6 2,204,714 - Pf1N1B4_1927 0.10 -1.6 2,204,714 - Pf1N1B4_1927 0.10 -0.6 2,204,714 - Pf1N1B4_1927 0.10 -1.2 2,204,717 - Pf1N1B4_1927 0.10 +0.9 2,204,717 - Pf1N1B4_1927 0.10 -0.6 2,204,717 - Pf1N1B4_1927 0.10 -1.9 2,204,717 - Pf1N1B4_1927 0.10 -3.0 2,204,733 - Pf1N1B4_1927 0.12 -1.6 2,204,733 - Pf1N1B4_1927 0.12 -2.4 2,204,733 - Pf1N1B4_1927 0.12 -1.6 2,204,806 - Pf1N1B4_1927 0.18 -3.4 2,204,806 - Pf1N1B4_1927 0.18 -1.6 2,204,806 - Pf1N1B4_1927 0.18 -1.2 2,204,806 - Pf1N1B4_1927 0.18 -1.2 2,204,810 - Pf1N1B4_1927 0.19 -1.6 2,204,810 - Pf1N1B4_1927 0.19 -2.6 2,204,810 - Pf1N1B4_1927 0.19 -2.2 2,204,810 - Pf1N1B4_1927 0.19 -1.9 2,204,810 - Pf1N1B4_1927 0.19 -3.2 2,204,810 - Pf1N1B4_1927 0.19 -3.3 2,204,810 - Pf1N1B4_1927 0.19 -1.6 2,204,810 - Pf1N1B4_1927 0.19 -1.6 2,204,912 - Pf1N1B4_1927 0.28 -2.2 2,204,912 - Pf1N1B4_1927 0.28 -3.8 2,204,912 - Pf1N1B4_1927 0.28 -3.0 2,204,927 - Pf1N1B4_1927 0.29 -2.6 2,205,043 - Pf1N1B4_1927 0.40 -1.2 2,205,043 - Pf1N1B4_1927 0.40 -2.4 2,205,043 - Pf1N1B4_1927 0.40 +0.4 2,205,043 - Pf1N1B4_1927 0.40 +0.4 2,205,118 - Pf1N1B4_1927 0.47 +0.4 2,205,118 - Pf1N1B4_1927 0.47 -2.4 2,205,118 - Pf1N1B4_1927 0.47 -1.7 2,205,118 - Pf1N1B4_1927 0.47 +0.4 2,205,118 - Pf1N1B4_1927 0.47 -1.2 2,205,138 - Pf1N1B4_1927 0.48 -2.2 2,205,138 - Pf1N1B4_1927 0.48 -0.6 2,205,200 - Pf1N1B4_1927 0.54 -0.8 2,205,449 + Pf1N1B4_1927 0.77 -1.6 2,205,449 + Pf1N1B4_1927 0.77 -1.4 2,205,449 + Pf1N1B4_1927 0.77 -2.2 2,205,502 + Pf1N1B4_1927 0.81 -1.7 2,205,502 + Pf1N1B4_1927 0.81 -2.2 2,205,503 - Pf1N1B4_1927 0.82 -1.2 2,205,503 - Pf1N1B4_1927 0.82 -1.2 2,205,503 - Pf1N1B4_1927 0.82 -1.9 2,205,503 - Pf1N1B4_1927 0.82 -1.6 2,205,503 - Pf1N1B4_1927 0.82 -2.6 2,205,503 - Pf1N1B4_1927 0.82 -1.6 2,205,534 - Pf1N1B4_1927 0.84 -1.4 2,205,536 + Pf1N1B4_1927 0.85 -0.6 2,205,536 + Pf1N1B4_1927 0.85 -0.6 2,205,536 + Pf1N1B4_1927 0.85 -2.4 2,205,537 - Pf1N1B4_1927 0.85 -2.6 2,205,547 + Pf1N1B4_1927 0.86 -2.6 2,205,698 + -1.6 2,205,698 + -0.6 2,205,698 + -3.4 2,205,698 + -1.9 2,205,698 + -2.4 2,205,698 + -0.6 2,205,698 + -0.9 2,205,699 - -4.0 2,205,699 - -2.4 2,205,699 - -1.9 2,205,699 - -1.9 2,205,699 - -1.2 2,205,699 - -1.2 2,205,708 + -1.9 2,205,708 + -1.0 2,205,708 + -0.6 2,205,708 + -1.9 2,205,708 + -6.1 2,205,708 + +0.4 2,205,708 + -5.1 2,205,708 + -1.2 2,205,708 + -2.4 2,205,708 + -0.2 2,205,708 + -1.5 2,205,708 + -2.7 2,205,708 + -2.6 2,205,708 + -2.4 2,205,709 - +0.1 2,205,709 - -1.9 2,205,709 - -1.2 2,205,709 - -1.0 2,205,709 - -2.7 2,205,709 - -1.3 2,205,709 - -1.6 2,205,709 - +0.0 2,205,709 - -2.6 2,205,709 - -1.6 2,205,709 - -1.2 2,205,709 - +1.0 2,205,709 - -0.9 2,205,709 - -2.0 2,205,709 - -0.6 2,205,709 - -0.5 2,205,709 - -1.9 2,205,709 - -0.8 2,205,709 - -1.0 2,205,709 - +1.2 2,205,709 - -2.2 2,205,709 - -1.2 2,205,724 + -3.0 2,205,724 + -3.7 2,205,724 + -2.6 2,205,724 + -3.0 2,205,724 + -1.5 2,205,724 + -0.6 2,205,724 + -0.6 2,205,724 + -1.9 2,205,725 - +1.2 2,205,725 - +1.0 2,205,725 - +2.5 2,205,725 - +1.0 2,205,725 - +2.9 2,205,725 - -0.3 2,205,725 - +3.0 2,205,725 - +0.2 2,205,725 - +2.7 2,205,725 - +3.2 2,205,725 - +1.4 2,205,725 - +1.5 2,205,725 - +1.3 2,205,725 - +2.1 2,205,725 - +1.6 2,205,725 - +3.4 2,205,725 - +1.9 2,205,725 - +2.7 2,205,728 + -2.2 2,205,728 + -0.6 2,205,728 + -0.6 2,205,728 + +0.4 2,205,728 + -3.7 2,205,728 + -4.6 2,205,728 + -1.6 2,205,729 - +0.8 2,205,729 - +1.2 2,205,729 - +1.2 2,205,729 - +0.4 2,205,729 - +2.9 2,205,729 - +0.0 2,205,729 - +3.9 2,205,729 - +2.3 2,205,729 - +1.3 2,205,729 - +2.2
Or see this region's nucleotide sequence