Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1914

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1913 and Pf1N1B4_1914 overlap by 4 nucleotidesPf1N1B4_1914 and Pf1N1B4_1915 are separated by 22 nucleotides Pf1N1B4_1913 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 2,187,304 to 2,188,263 _1913 Pf1N1B4_1914 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 2,188,260 to 2,189,570 _1914 Pf1N1B4_1915 - Trk system potassium uptake protein TrkA, at 2,189,593 to 2,190,966 _1915 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2187.287 kb on + strandat 2187.287 kb on + strandat 2187.287 kb on + strandat 2187.287 kb on + strandat 2187.287 kb on + strandat 2187.287 kb on + strandat 2188.503 kb on + strand, within Pf1N1B4_1914at 2188.504 kb on - strand, within Pf1N1B4_1914at 2188.515 kb on + strand, within Pf1N1B4_1914at 2188.515 kb on + strand, within Pf1N1B4_1914at 2188.515 kb on + strand, within Pf1N1B4_1914at 2188.516 kb on - strand, within Pf1N1B4_1914at 2188.812 kb on + strand, within Pf1N1B4_1914at 2188.813 kb on - strand, within Pf1N1B4_1914at 2188.813 kb on - strand, within Pf1N1B4_1914at 2188.813 kb on - strand, within Pf1N1B4_1914at 2188.813 kb on - strand, within Pf1N1B4_1914at 2188.813 kb on - strand, within Pf1N1B4_1914at 2188.813 kb on - strand, within Pf1N1B4_1914at 2188.860 kb on + strand, within Pf1N1B4_1914at 2188.860 kb on + strand, within Pf1N1B4_1914at 2188.861 kb on - strand, within Pf1N1B4_1914at 2188.877 kb on + strand, within Pf1N1B4_1914at 2188.877 kb on + strand, within Pf1N1B4_1914at 2189.330 kb on + strand, within Pf1N1B4_1914at 2189.331 kb on - strand, within Pf1N1B4_1914at 2189.331 kb on - strand, within Pf1N1B4_1914at 2189.331 kb on - strand, within Pf1N1B4_1914at 2189.331 kb on - strand, within Pf1N1B4_1914at 2189.331 kb on - strand, within Pf1N1B4_1914at 2189.368 kb on - strand, within Pf1N1B4_1914at 2189.497 kb on + strandat 2189.497 kb on + strandat 2189.529 kb on + strandat 2189.530 kb on - strandat 2189.532 kb on + strandat 2189.578 kb on + strandat 2189.579 kb on - strandat 2189.903 kb on - strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.983 kb on + strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2189.984 kb on - strand, within Pf1N1B4_1915at 2190.023 kb on + strand, within Pf1N1B4_1915at 2190.023 kb on + strand, within Pf1N1B4_1915at 2190.023 kb on + strand, within Pf1N1B4_1915at 2190.023 kb on + strand, within Pf1N1B4_1915at 2190.023 kb on + strand, within Pf1N1B4_1915at 2190.024 kb on - strand, within Pf1N1B4_1915at 2190.070 kb on + strand, within Pf1N1B4_1915at 2190.070 kb on + strand, within Pf1N1B4_1915at 2190.071 kb on - strand, within Pf1N1B4_1915at 2190.071 kb on - strand, within Pf1N1B4_1915at 2190.071 kb on - strand, within Pf1N1B4_1915at 2190.071 kb on - strand, within Pf1N1B4_1915at 2190.071 kb on - strand, within Pf1N1B4_1915at 2190.074 kb on - strand, within Pf1N1B4_1915at 2190.215 kb on + strand, within Pf1N1B4_1915at 2190.215 kb on + strand, within Pf1N1B4_1915at 2190.215 kb on + strand, within Pf1N1B4_1915at 2190.240 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strand, within Pf1N1B4_1915at 2190.283 kb on + strandat 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.284 kb on - strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.291 kb on + strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.292 kb on - strand, within Pf1N1B4_1915at 2190.360 kb on - strand, within Pf1N1B4_1915

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,187,287 + -0.6
2,187,287 + -1.4
2,187,287 + -2.4
2,187,287 + -0.6
2,187,287 + +0.7
2,187,287 + -0.2
2,188,503 + Pf1N1B4_1914 0.19 -1.3
2,188,504 - Pf1N1B4_1914 0.19 -3.0
2,188,515 + Pf1N1B4_1914 0.19 -0.6
2,188,515 + Pf1N1B4_1914 0.19 -0.2
2,188,515 + Pf1N1B4_1914 0.19 -0.6
2,188,516 - Pf1N1B4_1914 0.20 -0.6
2,188,812 + Pf1N1B4_1914 0.42 -0.1
2,188,813 - Pf1N1B4_1914 0.42 -1.0
2,188,813 - Pf1N1B4_1914 0.42 -2.4
2,188,813 - Pf1N1B4_1914 0.42 -1.2
2,188,813 - Pf1N1B4_1914 0.42 -1.6
2,188,813 - Pf1N1B4_1914 0.42 +0.4
2,188,813 - Pf1N1B4_1914 0.42 -2.2
2,188,860 + Pf1N1B4_1914 0.46 -1.6
2,188,860 + Pf1N1B4_1914 0.46 +0.5
2,188,861 - Pf1N1B4_1914 0.46 +2.4
2,188,877 + Pf1N1B4_1914 0.47 -1.6
2,188,877 + Pf1N1B4_1914 0.47 +2.4
2,189,330 + Pf1N1B4_1914 0.82 -1.0
2,189,331 - Pf1N1B4_1914 0.82 -1.3
2,189,331 - Pf1N1B4_1914 0.82 -1.2
2,189,331 - Pf1N1B4_1914 0.82 -0.8
2,189,331 - Pf1N1B4_1914 0.82 -1.0
2,189,331 - Pf1N1B4_1914 0.82 -0.6
2,189,368 - Pf1N1B4_1914 0.85 -1.2
2,189,497 + -0.1
2,189,497 + +0.4
2,189,529 + +1.4
2,189,530 - +0.4
2,189,532 + +2.0
2,189,578 + +2.0
2,189,579 - +0.2
2,189,903 - Pf1N1B4_1915 0.23 +0.4
2,189,983 + Pf1N1B4_1915 0.28 -1.3
2,189,983 + Pf1N1B4_1915 0.28 -1.9
2,189,983 + Pf1N1B4_1915 0.28 -0.3
2,189,983 + Pf1N1B4_1915 0.28 -0.6
2,189,983 + Pf1N1B4_1915 0.28 -1.2
2,189,983 + Pf1N1B4_1915 0.28 -0.6
2,189,983 + Pf1N1B4_1915 0.28 -0.1
2,189,983 + Pf1N1B4_1915 0.28 -2.4
2,189,983 + Pf1N1B4_1915 0.28 -0.8
2,189,983 + Pf1N1B4_1915 0.28 +0.8
2,189,983 + Pf1N1B4_1915 0.28 +0.4
2,189,983 + Pf1N1B4_1915 0.28 +0.9
2,189,983 + Pf1N1B4_1915 0.28 +1.4
2,189,984 - Pf1N1B4_1915 0.28 -1.1
2,189,984 - Pf1N1B4_1915 0.28 -1.5
2,189,984 - Pf1N1B4_1915 0.28 -0.9
2,189,984 - Pf1N1B4_1915 0.28 -1.5
2,189,984 - Pf1N1B4_1915 0.28 -0.0
2,189,984 - Pf1N1B4_1915 0.28 -1.0
2,189,984 - Pf1N1B4_1915 0.28 -0.9
2,189,984 - Pf1N1B4_1915 0.28 -2.4
2,189,984 - Pf1N1B4_1915 0.28 -1.2
2,189,984 - Pf1N1B4_1915 0.28 +0.8
2,189,984 - Pf1N1B4_1915 0.28 -1.6
2,189,984 - Pf1N1B4_1915 0.28 -2.4
2,189,984 - Pf1N1B4_1915 0.28 +1.2
2,189,984 - Pf1N1B4_1915 0.28 -0.2
2,189,984 - Pf1N1B4_1915 0.28 +1.0
2,189,984 - Pf1N1B4_1915 0.28 -0.9
2,190,023 + Pf1N1B4_1915 0.31 -0.7
2,190,023 + Pf1N1B4_1915 0.31 -1.0
2,190,023 + Pf1N1B4_1915 0.31 -2.4
2,190,023 + Pf1N1B4_1915 0.31 -0.7
2,190,023 + Pf1N1B4_1915 0.31 -2.2
2,190,024 - Pf1N1B4_1915 0.31 -2.6
2,190,070 + Pf1N1B4_1915 0.35 -2.2
2,190,070 + Pf1N1B4_1915 0.35 -0.6
2,190,071 - Pf1N1B4_1915 0.35 -1.0
2,190,071 - Pf1N1B4_1915 0.35 +2.0
2,190,071 - Pf1N1B4_1915 0.35 -0.6
2,190,071 - Pf1N1B4_1915 0.35 -1.3
2,190,071 - Pf1N1B4_1915 0.35 -0.7
2,190,074 - Pf1N1B4_1915 0.35 +0.3
2,190,215 + Pf1N1B4_1915 0.45 -2.7
2,190,215 + Pf1N1B4_1915 0.45 -1.2
2,190,215 + Pf1N1B4_1915 0.45 +0.7
2,190,240 + Pf1N1B4_1915 0.47 -1.0
2,190,283 + Pf1N1B4_1915 0.50 -1.6
2,190,283 + Pf1N1B4_1915 0.50 -0.4
2,190,283 + Pf1N1B4_1915 0.50 -0.3
2,190,283 + Pf1N1B4_1915 0.50 -2.2
2,190,283 + Pf1N1B4_1915 0.50 -0.6
2,190,283 + Pf1N1B4_1915 0.50 -0.4
2,190,283 + Pf1N1B4_1915 0.50 +0.4
2,190,283 + Pf1N1B4_1915 0.50 -1.8
2,190,283 + Pf1N1B4_1915 0.50 -1.7
2,190,283 + -1.2
2,190,284 - Pf1N1B4_1915 0.50 -1.9
2,190,284 - Pf1N1B4_1915 0.50 +0.4
2,190,284 - Pf1N1B4_1915 0.50 -1.1
2,190,284 - Pf1N1B4_1915 0.50 +2.8
2,190,284 - Pf1N1B4_1915 0.50 -0.2
2,190,284 - Pf1N1B4_1915 0.50 +0.4
2,190,284 - Pf1N1B4_1915 0.50 -0.9
2,190,284 - Pf1N1B4_1915 0.50 -2.6
2,190,284 - Pf1N1B4_1915 0.50 -2.2
2,190,284 - Pf1N1B4_1915 0.50 -2.4
2,190,291 + Pf1N1B4_1915 0.51 +0.3
2,190,291 + Pf1N1B4_1915 0.51 +0.2
2,190,291 + Pf1N1B4_1915 0.51 -1.2
2,190,291 + Pf1N1B4_1915 0.51 -0.6
2,190,291 + Pf1N1B4_1915 0.51 -0.6
2,190,292 - Pf1N1B4_1915 0.51 -1.5
2,190,292 - Pf1N1B4_1915 0.51 -0.2
2,190,292 - Pf1N1B4_1915 0.51 -0.3
2,190,292 - Pf1N1B4_1915 0.51 -2.7
2,190,292 - Pf1N1B4_1915 0.51 +0.6
2,190,360 - Pf1N1B4_1915 0.56 -1.6

Or see this region's nucleotide sequence