Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_185

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_184 and Pf1N1B4_185 are separated by 11 nucleotidesPf1N1B4_185 and Pf1N1B4_186 overlap by 30 nucleotidesPf1N1B4_186 and Pf1N1B4_5165 are separated by 90 nucleotidesPf1N1B4_5165 and Pf1N1B4_5166 are separated by 169 nucleotides Pf1N1B4_184 - Chromosome initiation inhibitor, at 227,441 to 228,400 _184 Pf1N1B4_185 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 228,412 to 230,304 _185 Pf1N1B4_186 - hypothetical protein, at 230,275 to 230,457 _186 Pf1N1B4_5165 - 5S RNA, at 230,548 to 230,667 _5165 Pf1N1B4_5166 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 230,837 to 233,729 _5166 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.412 kb on + strandat 227.427 kb on + strandat 227.440 kb on + strandat 227.456 kb on - strandat 227.516 kb on + strandat 227.516 kb on + strandat 227.517 kb on - strandat 227.517 kb on - strandat 227.807 kb on + strand, within Pf1N1B4_184at 227.967 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.984 kb on + strand, within Pf1N1B4_184at 227.985 kb on - strand, within Pf1N1B4_184at 227.991 kb on - strand, within Pf1N1B4_184at 228.179 kb on + strand, within Pf1N1B4_184at 228.179 kb on + strand, within Pf1N1B4_184at 228.231 kb on + strand, within Pf1N1B4_184at 228.306 kb on + strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.306 kb on + strandat 228.307 kb on - strandat 228.379 kb on + strandat 228.414 kb on - strandat 228.452 kb on + strandat 228.453 kb on - strandat 228.647 kb on + strand, within Pf1N1B4_185at 228.648 kb on - strand, within Pf1N1B4_185at 228.757 kb on + strand, within Pf1N1B4_185at 228.757 kb on + strand, within Pf1N1B4_185at 228.758 kb on - strand, within Pf1N1B4_185at 228.808 kb on + strand, within Pf1N1B4_185at 228.809 kb on - strand, within Pf1N1B4_185at 228.945 kb on - strand, within Pf1N1B4_185at 228.945 kb on - strand, within Pf1N1B4_185at 228.945 kb on - strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.094 kb on + strand, within Pf1N1B4_185at 229.095 kb on - strand, within Pf1N1B4_185at 229.137 kb on - strand, within Pf1N1B4_185at 229.137 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.143 kb on - strand, within Pf1N1B4_185at 229.214 kb on + strandat 229.214 kb on + strand, within Pf1N1B4_185at 229.218 kb on + strand, within Pf1N1B4_185at 229.218 kb on + strand, within Pf1N1B4_185at 229.218 kb on + strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.219 kb on - strand, within Pf1N1B4_185at 229.241 kb on + strand, within Pf1N1B4_185at 229.398 kb on - strand, within Pf1N1B4_185at 229.398 kb on - strand, within Pf1N1B4_185at 229.673 kb on + strand, within Pf1N1B4_185at 229.673 kb on + strandat 229.718 kb on + strand, within Pf1N1B4_185at 229.719 kb on - strand, within Pf1N1B4_185at 229.896 kb on - strand, within Pf1N1B4_185at 230.090 kb on + strand, within Pf1N1B4_185at 230.122 kb on + strandat 230.122 kb on + strandat 230.122 kb on + strandat 230.123 kb on - strandat 230.159 kb on + strandat 230.159 kb on + strandat 230.159 kb on + strandat 230.165 kb on + strandat 230.186 kb on + strandat 230.186 kb on + strandat 230.186 kb on + strandat 230.186 kb on + strandat 230.186 kb on + strandat 230.187 kb on - strandat 230.187 kb on - strandat 230.187 kb on - strandat 230.214 kb on + strandat 230.251 kb on - strandat 230.327 kb on + strand, within Pf1N1B4_186at 230.327 kb on + strand, within Pf1N1B4_186at 230.328 kb on - strand, within Pf1N1B4_186at 230.443 kb on + strandat 230.443 kb on + strandat 230.444 kb on - strandat 230.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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227,412 + +1.0
227,427 + -0.0
227,440 + -0.2
227,456 - -2.5
227,516 + -0.1
227,516 + +2.1
227,517 - +1.4
227,517 - +0.4
227,807 + Pf1N1B4_184 0.38 +0.2
227,967 + Pf1N1B4_184 0.55 -0.8
227,984 + Pf1N1B4_184 0.57 +1.6
227,984 + Pf1N1B4_184 0.57 -0.2
227,984 + Pf1N1B4_184 0.57 -0.5
227,984 + Pf1N1B4_184 0.57 +0.1
227,985 - Pf1N1B4_184 0.57 -0.8
227,991 - Pf1N1B4_184 0.57 +0.2
228,179 + Pf1N1B4_184 0.77 +0.4
228,179 + Pf1N1B4_184 0.77 +0.8
228,231 + Pf1N1B4_184 0.82 -1.8
228,306 + -0.2
228,306 + -0.2
228,306 + +0.1
228,306 + -0.2
228,307 - +2.0
228,379 + -0.4
228,414 - -0.5
228,452 + -0.2
228,453 - +1.3
228,647 + Pf1N1B4_185 0.12 -2.2
228,648 - Pf1N1B4_185 0.12 -0.8
228,757 + Pf1N1B4_185 0.18 -0.2
228,757 + Pf1N1B4_185 0.18 +1.6
228,758 - Pf1N1B4_185 0.18 -0.6
228,808 + Pf1N1B4_185 0.21 -0.7
228,809 - Pf1N1B4_185 0.21 +0.1
228,945 - Pf1N1B4_185 0.28 -0.2
228,945 - Pf1N1B4_185 0.28 +1.1
228,945 - Pf1N1B4_185 0.28 +2.1
229,094 + Pf1N1B4_185 0.36 +0.7
229,094 + Pf1N1B4_185 0.36 +2.3
229,094 + Pf1N1B4_185 0.36 +1.2
229,094 + Pf1N1B4_185 0.36 -1.3
229,095 - Pf1N1B4_185 0.36 -0.4
229,137 - Pf1N1B4_185 0.38 -1.8
229,137 - Pf1N1B4_185 0.38 -1.2
229,143 - Pf1N1B4_185 0.39 +1.2
229,143 - Pf1N1B4_185 0.39 +1.4
229,143 - Pf1N1B4_185 0.39 -0.2
229,143 - Pf1N1B4_185 0.39 -2.7
229,143 - Pf1N1B4_185 0.39 -1.1
229,143 - Pf1N1B4_185 0.39 -1.2
229,143 - Pf1N1B4_185 0.39 -1.0
229,143 - Pf1N1B4_185 0.39 -1.5
229,143 - Pf1N1B4_185 0.39 -2.2
229,143 - Pf1N1B4_185 0.39 -1.2
229,214 + +0.4
229,214 + Pf1N1B4_185 0.42 +0.4
229,218 + Pf1N1B4_185 0.43 +0.2
229,218 + Pf1N1B4_185 0.43 -1.3
229,218 + Pf1N1B4_185 0.43 -0.8
229,219 - Pf1N1B4_185 0.43 +0.4
229,219 - Pf1N1B4_185 0.43 -1.2
229,219 - Pf1N1B4_185 0.43 +0.4
229,219 - Pf1N1B4_185 0.43 -1.3
229,219 - Pf1N1B4_185 0.43 +2.1
229,241 + Pf1N1B4_185 0.44 +0.5
229,398 - Pf1N1B4_185 0.52 -0.2
229,398 - Pf1N1B4_185 0.52 +1.1
229,673 + Pf1N1B4_185 0.67 -2.2
229,673 + -1.8
229,718 + Pf1N1B4_185 0.69 -0.8
229,719 - Pf1N1B4_185 0.69 +0.6
229,896 - Pf1N1B4_185 0.78 +1.0
230,090 + Pf1N1B4_185 0.89 -0.6
230,122 + +1.2
230,122 + -0.5
230,122 + +1.3
230,123 - -1.2
230,159 + +0.1
230,159 + +0.6
230,159 + +1.0
230,165 + -0.2
230,186 + -3.4
230,186 + +1.1
230,186 + +0.4
230,186 + +0.6
230,186 + -0.0
230,187 - +0.3
230,187 - -0.2
230,187 - -2.5
230,214 + -0.2
230,251 - -1.8
230,327 + Pf1N1B4_186 0.28 -1.2
230,327 + Pf1N1B4_186 0.28 +1.1
230,328 - Pf1N1B4_186 0.29 -0.6
230,443 + -0.2
230,443 + +1.1
230,444 - -0.6
230,444 - -0.2

Or see this region's nucleotide sequence