Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1781

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1779 and Pf1N1B4_1780 are separated by 134 nucleotidesPf1N1B4_1780 and Pf1N1B4_1781 are separated by 383 nucleotidesPf1N1B4_1781 and Pf1N1B4_1782 are separated by 322 nucleotidesPf1N1B4_1782 and Pf1N1B4_1783 are separated by 78 nucleotides Pf1N1B4_1779 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 2,032,458 to 2,033,999 _1779 Pf1N1B4_1780 - FIG00961586: hypothetical protein, at 2,034,134 to 2,034,322 _1780 Pf1N1B4_1781 - hypothetical protein, at 2,034,706 to 2,035,005 _1781 Pf1N1B4_1782 - hypothetical protein, at 2,035,328 to 2,035,510 _1782 Pf1N1B4_1783 - hypothetical protein, at 2,035,589 to 2,036,581 _1783 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.998 kb on - strandat 2033.998 kb on - strandat 2033.998 kb on - strandat 2034.001 kb on + strandat 2034.080 kb on + strandat 2034.080 kb on + strandat 2034.125 kb on + strandat 2034.126 kb on - strandat 2034.135 kb on + strandat 2034.136 kb on - strandat 2034.136 kb on - strandat 2034.198 kb on + strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.285 kb on + strand, within Pf1N1B4_1780at 2034.301 kb on - strand, within Pf1N1B4_1780at 2034.349 kb on - strandat 2034.349 kb on - strandat 2034.349 kb on - strandat 2034.368 kb on + strandat 2034.452 kb on + strandat 2034.452 kb on + strandat 2034.452 kb on + strandat 2034.453 kb on - strandat 2034.517 kb on + strandat 2034.517 kb on + strandat 2034.517 kb on + strandat 2034.517 kb on + strandat 2034.567 kb on + strandat 2034.783 kb on - strand, within Pf1N1B4_1781at 2034.967 kb on + strand, within Pf1N1B4_1781at 2034.967 kb on + strand, within Pf1N1B4_1781at 2034.968 kb on - strand, within Pf1N1B4_1781at 2034.999 kb on + strandat 2034.999 kb on + strandat 2034.999 kb on + strandat 2034.999 kb on + strandat 2035.000 kb on - strandat 2035.000 kb on - strandat 2035.000 kb on - strandat 2035.008 kb on + strandat 2035.008 kb on + strandat 2035.008 kb on + strandat 2035.008 kb on + strandat 2035.008 kb on + strandat 2035.008 kb on + strandat 2035.008 kb on + strandat 2035.009 kb on - strandat 2035.009 kb on - strandat 2035.012 kb on + strandat 2035.012 kb on + strandat 2035.013 kb on - strandat 2035.013 kb on - strandat 2035.013 kb on - strandat 2035.096 kb on + strandat 2035.097 kb on - strandat 2035.097 kb on - strandat 2035.097 kb on - strandat 2035.097 kb on - strandat 2035.097 kb on - strandat 2035.097 kb on - strandat 2035.100 kb on + strandat 2035.100 kb on + strandat 2035.100 kb on + strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.101 kb on - strandat 2035.117 kb on - strandat 2035.141 kb on + strandat 2035.141 kb on + strandat 2035.141 kb on + strandat 2035.142 kb on - strandat 2035.142 kb on - strandat 2035.142 kb on - strandat 2035.142 kb on - strandat 2035.143 kb on + strandat 2035.143 kb on + strandat 2035.143 kb on + strandat 2035.144 kb on - strandat 2035.144 kb on - strandat 2035.144 kb on - strandat 2035.144 kb on - strandat 2035.144 kb on - strandat 2035.173 kb on + strandat 2035.173 kb on + strandat 2035.173 kb on + strandat 2035.173 kb on + strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.174 kb on - strandat 2035.188 kb on + strandat 2035.189 kb on - strandat 2035.189 kb on - strandat 2035.193 kb on - strandat 2035.193 kb on - strandat 2035.193 kb on - strandat 2035.193 kb on - strandat 2035.248 kb on + strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.249 kb on - strandat 2035.273 kb on - strandat 2035.297 kb on - strandat 2035.297 kb on - strandat 2035.400 kb on - strand, within Pf1N1B4_1782at 2035.456 kb on - strand, within Pf1N1B4_1782at 2035.456 kb on - strand, within Pf1N1B4_1782at 2035.456 kb on - strand, within Pf1N1B4_1782at 2035.456 kb on - strand, within Pf1N1B4_1782at 2035.524 kb on + strandat 2035.524 kb on + strandat 2035.524 kb on + strandat 2035.524 kb on + strandat 2035.525 kb on - strandat 2035.525 kb on - strandat 2035.525 kb on - strandat 2035.525 kb on - strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.597 kb on + strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.598 kb on - strandat 2035.605 kb on + strandat 2035.651 kb on + strandat 2035.651 kb on + strandat 2035.651 kb on + strandat 2035.651 kb on + strandat 2035.652 kb on - strandat 2035.652 kb on - strandat 2035.652 kb on - strandat 2035.652 kb on - strandat 2035.652 kb on - strandat 2035.653 kb on + strandat 2035.653 kb on + strandat 2035.653 kb on + strandat 2035.653 kb on + strandat 2035.653 kb on + strandat 2035.654 kb on - strandat 2035.654 kb on - strandat 2035.654 kb on - strandat 2035.654 kb on - strandat 2035.654 kb on - strandat 2035.654 kb on - strandat 2035.707 kb on + strand, within Pf1N1B4_1783at 2035.707 kb on + strand, within Pf1N1B4_1783at 2035.737 kb on + strand, within Pf1N1B4_1783at 2035.737 kb on + strand, within Pf1N1B4_1783at 2035.737 kb on + strand, within Pf1N1B4_1783at 2035.738 kb on - strand, within Pf1N1B4_1783at 2035.743 kb on + strand, within Pf1N1B4_1783at 2035.743 kb on + strand, within Pf1N1B4_1783at 2035.743 kb on + strand, within Pf1N1B4_1783at 2035.743 kb on + strand, within Pf1N1B4_1783at 2035.743 kb on + strand, within Pf1N1B4_1783at 2035.744 kb on - strand, within Pf1N1B4_1783at 2035.744 kb on - strand, within Pf1N1B4_1783at 2035.744 kb on - strand, within Pf1N1B4_1783at 2035.744 kb on - strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.749 kb on + strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.750 kb on - strand, within Pf1N1B4_1783at 2035.768 kb on - strand, within Pf1N1B4_1783at 2035.768 kb on - strand, within Pf1N1B4_1783at 2035.980 kb on + strand, within Pf1N1B4_1783at 2035.980 kb on + strand, within Pf1N1B4_1783at 2035.980 kb on + strand, within Pf1N1B4_1783at 2035.980 kb on + strand, within Pf1N1B4_1783

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,033,997 + +1.7
2,033,997 + +0.1
2,033,997 + +0.7
2,033,997 + +0.4
2,033,997 + -0.6
2,033,998 - -0.6
2,033,998 - +3.0
2,033,998 - -1.6
2,034,001 + +0.4
2,034,080 + +1.0
2,034,080 + +1.2
2,034,125 + +0.4
2,034,126 - +1.1
2,034,135 + -0.6
2,034,136 - +0.1
2,034,136 - -0.2
2,034,198 + Pf1N1B4_1780 0.34 -0.0
2,034,199 - Pf1N1B4_1780 0.34 +0.1
2,034,199 - Pf1N1B4_1780 0.34 +0.4
2,034,199 - Pf1N1B4_1780 0.34 +1.4
2,034,199 - Pf1N1B4_1780 0.34 +1.1
2,034,285 + Pf1N1B4_1780 0.80 +0.4
2,034,301 - Pf1N1B4_1780 0.88 +0.4
2,034,349 - -1.4
2,034,349 - +0.4
2,034,349 - -0.2
2,034,368 + -2.2
2,034,452 + -0.4
2,034,452 + +1.1
2,034,452 + +1.5
2,034,453 - +1.8
2,034,517 + -0.6
2,034,517 + -1.9
2,034,517 + -0.6
2,034,517 + -1.4
2,034,567 + -0.9
2,034,783 - Pf1N1B4_1781 0.26 -2.9
2,034,967 + Pf1N1B4_1781 0.87 -0.8
2,034,967 + Pf1N1B4_1781 0.87 -0.0
2,034,968 - Pf1N1B4_1781 0.87 -0.1
2,034,999 + +0.1
2,034,999 + +0.8
2,034,999 + +0.8
2,034,999 + -1.2
2,035,000 - +1.4
2,035,000 - -0.6
2,035,000 - +1.4
2,035,008 + -1.6
2,035,008 + -0.4
2,035,008 + +1.1
2,035,008 + -0.0
2,035,008 + +1.6
2,035,008 + +0.4
2,035,008 + +1.4
2,035,009 - -0.6
2,035,009 - +0.4
2,035,012 + +1.1
2,035,012 + -2.6
2,035,013 - -1.2
2,035,013 - -1.6
2,035,013 - +2.3
2,035,096 + +2.0
2,035,097 - +0.4
2,035,097 - -1.1
2,035,097 - -1.2
2,035,097 - -2.8
2,035,097 - -0.2
2,035,097 - -0.8
2,035,100 + -0.6
2,035,100 + -0.6
2,035,100 + -2.0
2,035,101 - +0.4
2,035,101 - -1.6
2,035,101 - -0.6
2,035,101 - -1.3
2,035,101 - -0.2
2,035,101 - +0.4
2,035,101 - +0.7
2,035,101 - -1.2
2,035,117 - +1.8
2,035,141 + -0.9
2,035,141 + -1.2
2,035,141 + +0.4
2,035,142 - +0.1
2,035,142 - -0.3
2,035,142 - -0.9
2,035,142 - -0.2
2,035,143 + +0.1
2,035,143 + +0.6
2,035,143 + +2.0
2,035,144 - +0.1
2,035,144 - -0.6
2,035,144 - +1.8
2,035,144 - -1.2
2,035,144 - -0.6
2,035,173 + -0.6
2,035,173 + +0.6
2,035,173 + -1.2
2,035,173 + +0.4
2,035,174 - -2.9
2,035,174 - -0.2
2,035,174 - +0.3
2,035,174 - +1.2
2,035,174 - -0.2
2,035,174 - +0.2
2,035,174 - -0.6
2,035,174 - +0.3
2,035,174 - -0.2
2,035,188 + -1.2
2,035,189 - +0.4
2,035,189 - +0.4
2,035,193 - -2.2
2,035,193 - +1.4
2,035,193 - +0.4
2,035,193 - +0.4
2,035,248 + -0.2
2,035,249 - -0.6
2,035,249 - +0.0
2,035,249 - -0.6
2,035,249 - -3.3
2,035,249 - -0.8
2,035,249 - -1.9
2,035,249 - -1.2
2,035,249 - -0.6
2,035,249 - +0.4
2,035,249 - -1.2
2,035,273 - -0.8
2,035,297 - -1.4
2,035,297 - +0.4
2,035,400 - Pf1N1B4_1782 0.39 -1.6
2,035,456 - Pf1N1B4_1782 0.70 +0.5
2,035,456 - Pf1N1B4_1782 0.70 -0.6
2,035,456 - Pf1N1B4_1782 0.70 -0.6
2,035,456 - Pf1N1B4_1782 0.70 +1.4
2,035,524 + +0.5
2,035,524 + +0.3
2,035,524 + -0.6
2,035,524 + -1.2
2,035,525 - -0.5
2,035,525 - -1.2
2,035,525 - +1.4
2,035,525 - -0.1
2,035,597 + -0.9
2,035,597 + -0.2
2,035,597 + +2.7
2,035,597 + +1.0
2,035,597 + +0.4
2,035,597 + -0.7
2,035,597 + -2.8
2,035,597 + +1.2
2,035,598 - +0.4
2,035,598 - +1.4
2,035,598 - +0.1
2,035,598 - -1.9
2,035,598 - -0.1
2,035,598 - -0.6
2,035,598 - +0.8
2,035,598 - +0.2
2,035,598 - -0.6
2,035,598 - -0.2
2,035,598 - +0.6
2,035,598 - +0.1
2,035,598 - -0.2
2,035,598 - +0.1
2,035,605 + +0.0
2,035,651 + +0.5
2,035,651 + -0.0
2,035,651 + -0.6
2,035,651 + +0.2
2,035,652 - +0.4
2,035,652 - +1.9
2,035,652 - +1.1
2,035,652 - +0.6
2,035,652 - +0.2
2,035,653 + +1.4
2,035,653 + -0.5
2,035,653 + -0.3
2,035,653 + -0.4
2,035,653 + -0.6
2,035,654 - +2.0
2,035,654 - -1.4
2,035,654 - +0.4
2,035,654 - +1.6
2,035,654 - +0.6
2,035,654 - -0.4
2,035,707 + Pf1N1B4_1783 0.12 +0.7
2,035,707 + Pf1N1B4_1783 0.12 +1.1
2,035,737 + Pf1N1B4_1783 0.15 +1.1
2,035,737 + Pf1N1B4_1783 0.15 +0.6
2,035,737 + Pf1N1B4_1783 0.15 +0.6
2,035,738 - Pf1N1B4_1783 0.15 -1.2
2,035,743 + Pf1N1B4_1783 0.16 +0.6
2,035,743 + Pf1N1B4_1783 0.16 -0.2
2,035,743 + Pf1N1B4_1783 0.16 +1.1
2,035,743 + Pf1N1B4_1783 0.16 +2.4
2,035,743 + Pf1N1B4_1783 0.16 -1.6
2,035,744 - Pf1N1B4_1783 0.16 +1.3
2,035,744 - Pf1N1B4_1783 0.16 -0.0
2,035,744 - Pf1N1B4_1783 0.16 -1.6
2,035,744 - Pf1N1B4_1783 0.16 -1.2
2,035,749 + Pf1N1B4_1783 0.16 -2.0
2,035,749 + Pf1N1B4_1783 0.16 +0.1
2,035,749 + Pf1N1B4_1783 0.16 +1.0
2,035,749 + Pf1N1B4_1783 0.16 +0.5
2,035,749 + Pf1N1B4_1783 0.16 -0.6
2,035,749 + Pf1N1B4_1783 0.16 -0.6
2,035,749 + Pf1N1B4_1783 0.16 -2.2
2,035,750 - Pf1N1B4_1783 0.16 +0.1
2,035,750 - Pf1N1B4_1783 0.16 -1.9
2,035,750 - Pf1N1B4_1783 0.16 +3.6
2,035,750 - Pf1N1B4_1783 0.16 +1.2
2,035,750 - Pf1N1B4_1783 0.16 +0.8
2,035,750 - Pf1N1B4_1783 0.16 -0.4
2,035,750 - Pf1N1B4_1783 0.16 +0.2
2,035,750 - Pf1N1B4_1783 0.16 -0.5
2,035,750 - Pf1N1B4_1783 0.16 -1.4
2,035,768 - Pf1N1B4_1783 0.18 +0.4
2,035,768 - Pf1N1B4_1783 0.18 -2.2
2,035,980 + Pf1N1B4_1783 0.39 -0.1
2,035,980 + Pf1N1B4_1783 0.39 +0.7
2,035,980 + Pf1N1B4_1783 0.39 +0.4
2,035,980 + Pf1N1B4_1783 0.39 -0.7

Or see this region's nucleotide sequence