Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1665 and Pf1N1B4_1666 overlap by 4 nucleotides Pf1N1B4_1666 and Pf1N1B4_1667 are separated by 40 nucleotides Pf1N1B4_1667 and Pf1N1B4_1668 are separated by 117 nucleotides
Pf1N1B4_1665 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 1,908,671 to 1,910,425
_1665
Pf1N1B4_1666 - C4-dicarboxylate transport transcriptional regulatory protein, at 1,910,422 to 1,911,816
_1666
Pf1N1B4_1667 - Histone acetyltransferase HPA2 and related acetyltransferases, at 1,911,857 to 1,912,315
_1667
Pf1N1B4_1668 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7), at 1,912,433 to 1,913,266
_1668
Position (kb)
1910
1911
1912 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1909.491 kb on + strand, within Pf1N1B4_1665 at 1909.491 kb on + strand, within Pf1N1B4_1665 at 1909.492 kb on - strand, within Pf1N1B4_1665 at 1909.536 kb on - strand, within Pf1N1B4_1665 at 1909.784 kb on + strand, within Pf1N1B4_1665 at 1909.974 kb on + strand, within Pf1N1B4_1665 at 1909.974 kb on + strand, within Pf1N1B4_1665 at 1910.073 kb on + strand, within Pf1N1B4_1665 at 1910.177 kb on + strand, within Pf1N1B4_1665 at 1910.177 kb on + strand, within Pf1N1B4_1665 at 1910.177 kb on + strand, within Pf1N1B4_1665 at 1910.177 kb on + strand, within Pf1N1B4_1665 at 1910.178 kb on - strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.240 kb on + strand, within Pf1N1B4_1665 at 1910.241 kb on - strand, within Pf1N1B4_1665 at 1910.241 kb on - strand, within Pf1N1B4_1665 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.774 kb on + strand, within Pf1N1B4_1666 at 1910.775 kb on - strand, within Pf1N1B4_1666 at 1910.775 kb on - strand, within Pf1N1B4_1666 at 1910.775 kb on - strand, within Pf1N1B4_1666 at 1910.775 kb on - strand, within Pf1N1B4_1666 at 1910.775 kb on - strand, within Pf1N1B4_1666 at 1910.775 kb on - strand, within Pf1N1B4_1666 at 1911.337 kb on + strand, within Pf1N1B4_1666 at 1911.337 kb on + strand, within Pf1N1B4_1666 at 1911.337 kb on + strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.338 kb on - strand, within Pf1N1B4_1666 at 1911.515 kb on + strand, within Pf1N1B4_1666 at 1911.515 kb on + strand, within Pf1N1B4_1666 at 1911.515 kb on + strand, within Pf1N1B4_1666 at 1911.516 kb on - strand, within Pf1N1B4_1666 at 1911.819 kb on + strand at 1911.825 kb on - strand at 1912.022 kb on + strand, within Pf1N1B4_1667 at 1912.023 kb on - strand, within Pf1N1B4_1667 at 1912.023 kb on - strand, within Pf1N1B4_1667 at 1912.208 kb on + strand, within Pf1N1B4_1667 at 1912.208 kb on + strand, within Pf1N1B4_1667 at 1912.208 kb on + strand, within Pf1N1B4_1667 at 1912.208 kb on + strand, within Pf1N1B4_1667 at 1912.208 kb on + strand, within Pf1N1B4_1667 at 1912.209 kb on - strand at 1912.209 kb on - strand, within Pf1N1B4_1667 at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.298 kb on + strand at 1912.299 kb on - strand at 1912.299 kb on - strand at 1912.299 kb on - strand at 1912.422 kb on - strand at 1912.422 kb on - strand at 1912.422 kb on - strand at 1912.731 kb on - strand, within Pf1N1B4_1668
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,909,491 + Pf1N1B4_1665 0.47 +0.9 1,909,491 + Pf1N1B4_1665 0.47 +2.2 1,909,492 - Pf1N1B4_1665 0.47 -1.2 1,909,536 - Pf1N1B4_1665 0.49 -0.6 1,909,784 + Pf1N1B4_1665 0.63 +2.0 1,909,974 + Pf1N1B4_1665 0.74 +1.1 1,909,974 + Pf1N1B4_1665 0.74 +3.0 1,910,073 + Pf1N1B4_1665 0.80 +1.0 1,910,177 + Pf1N1B4_1665 0.86 +2.0 1,910,177 + Pf1N1B4_1665 0.86 -1.6 1,910,177 + Pf1N1B4_1665 0.86 -1.2 1,910,177 + Pf1N1B4_1665 0.86 -1.0 1,910,178 - Pf1N1B4_1665 0.86 +0.4 1,910,240 + Pf1N1B4_1665 0.89 +1.1 1,910,240 + Pf1N1B4_1665 0.89 -1.0 1,910,240 + Pf1N1B4_1665 0.89 -1.0 1,910,240 + Pf1N1B4_1665 0.89 -1.2 1,910,240 + Pf1N1B4_1665 0.89 +0.4 1,910,240 + Pf1N1B4_1665 0.89 +1.4 1,910,240 + Pf1N1B4_1665 0.89 +0.4 1,910,240 + Pf1N1B4_1665 0.89 -0.6 1,910,240 + Pf1N1B4_1665 0.89 +0.8 1,910,240 + Pf1N1B4_1665 0.89 -1.5 1,910,241 - Pf1N1B4_1665 0.89 -0.2 1,910,241 - Pf1N1B4_1665 0.89 +0.4 1,910,774 + Pf1N1B4_1666 0.25 +1.6 1,910,774 + Pf1N1B4_1666 0.25 -2.4 1,910,774 + Pf1N1B4_1666 0.25 -0.6 1,910,774 + Pf1N1B4_1666 0.25 -2.4 1,910,774 + Pf1N1B4_1666 0.25 +1.3 1,910,774 + Pf1N1B4_1666 0.25 +1.0 1,910,774 + Pf1N1B4_1666 0.25 +1.7 1,910,775 - Pf1N1B4_1666 0.25 -1.6 1,910,775 - Pf1N1B4_1666 0.25 +0.7 1,910,775 - Pf1N1B4_1666 0.25 -1.6 1,910,775 - Pf1N1B4_1666 0.25 -0.6 1,910,775 - Pf1N1B4_1666 0.25 -0.6 1,910,775 - Pf1N1B4_1666 0.25 -1.4 1,911,337 + Pf1N1B4_1666 0.66 +0.4 1,911,337 + Pf1N1B4_1666 0.66 +4.6 1,911,337 + Pf1N1B4_1666 0.66 +1.4 1,911,338 - Pf1N1B4_1666 0.66 +0.4 1,911,338 - Pf1N1B4_1666 0.66 -0.4 1,911,338 - Pf1N1B4_1666 0.66 +1.0 1,911,338 - Pf1N1B4_1666 0.66 +2.2 1,911,338 - Pf1N1B4_1666 0.66 -0.2 1,911,338 - Pf1N1B4_1666 0.66 +2.4 1,911,338 - Pf1N1B4_1666 0.66 -0.3 1,911,338 - Pf1N1B4_1666 0.66 -1.0 1,911,338 - Pf1N1B4_1666 0.66 -2.0 1,911,515 + Pf1N1B4_1666 0.78 +1.1 1,911,515 + Pf1N1B4_1666 0.78 +0.2 1,911,515 + Pf1N1B4_1666 0.78 +1.4 1,911,516 - Pf1N1B4_1666 0.78 -0.6 1,911,819 + +0.4 1,911,825 - +0.2 1,912,022 + Pf1N1B4_1667 0.36 -0.2 1,912,023 - Pf1N1B4_1667 0.36 -0.2 1,912,023 - Pf1N1B4_1667 0.36 -2.4 1,912,208 + Pf1N1B4_1667 0.76 +0.0 1,912,208 + Pf1N1B4_1667 0.76 -0.6 1,912,208 + Pf1N1B4_1667 0.76 +0.4 1,912,208 + Pf1N1B4_1667 0.76 -0.6 1,912,208 + Pf1N1B4_1667 0.76 -0.4 1,912,209 - -0.4 1,912,209 - Pf1N1B4_1667 0.77 -0.3 1,912,298 + -0.0 1,912,298 + -0.0 1,912,298 + +0.4 1,912,298 + -0.6 1,912,298 + -1.6 1,912,298 + +1.4 1,912,298 + -0.9 1,912,298 + +0.3 1,912,298 + -1.6 1,912,298 + +0.4 1,912,298 + +0.9 1,912,298 + +1.7 1,912,298 + -0.2 1,912,299 - +1.0 1,912,299 - -0.6 1,912,299 - -2.4 1,912,422 - +0.7 1,912,422 - +0.4 1,912,422 - +0.4 1,912,731 - Pf1N1B4_1668 0.36 +2.0
Or see this region's nucleotide sequence