Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1606

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1604 and Pf1N1B4_1605 are separated by 174 nucleotidesPf1N1B4_1605 and Pf1N1B4_1606 overlap by 33 nucleotidesPf1N1B4_1606 and Pf1N1B4_1607 are separated by 353 nucleotidesPf1N1B4_1607 and Pf1N1B4_1608 are separated by 73 nucleotides Pf1N1B4_1604 - tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis, at 1,849,392 to 1,850,846 _1604 Pf1N1B4_1605 - hypothetical protein, at 1,851,021 to 1,851,209 _1605 Pf1N1B4_1606 - Glutamine synthetase type I (EC 6.3.1.2), at 1,851,177 to 1,852,583 _1606 Pf1N1B4_1607 - hypothetical protein, at 1,852,937 to 1,853,185 _1607 Pf1N1B4_1608 - FIG00956533: hypothetical protein, at 1,853,259 to 1,853,726 _1608 Position (kb) 1851 1852 1853Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1850.892 kb on - strandat 1851.022 kb on + strandat 1851.022 kb on + strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.024 kb on + strandat 1851.024 kb on + strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1852.645 kb on - strandat 1852.645 kb on - strandat 1852.687 kb on + strandat 1852.687 kb on + strandat 1852.688 kb on - strandat 1852.688 kb on - strandat 1852.739 kb on + strandat 1852.740 kb on - strandat 1852.740 kb on - strandat 1852.788 kb on + strandat 1852.789 kb on - strandat 1852.789 kb on - strandat 1852.891 kb on + strandat 1852.901 kb on + strandat 1852.901 kb on + strandat 1852.901 kb on + strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1852.902 kb on - strandat 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strandat 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.006 kb on + strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.007 kb on - strand, within Pf1N1B4_1607at 1853.009 kb on - strand, within Pf1N1B4_1607at 1853.009 kb on - strand, within Pf1N1B4_1607at 1853.009 kb on - strand, within Pf1N1B4_1607at 1853.009 kb on - strand, within Pf1N1B4_1607at 1853.009 kb on - strand, within Pf1N1B4_1607at 1853.026 kb on - strand, within Pf1N1B4_1607at 1853.026 kb on - strand, within Pf1N1B4_1607at 1853.026 kb on - strandat 1853.026 kb on - strand, within Pf1N1B4_1607at 1853.062 kb on + strand, within Pf1N1B4_1607at 1853.063 kb on - strand, within Pf1N1B4_1607at 1853.098 kb on + strand, within Pf1N1B4_1607at 1853.099 kb on - strand, within Pf1N1B4_1607at 1853.140 kb on + strand, within Pf1N1B4_1607at 1853.141 kb on - strand, within Pf1N1B4_1607at 1853.141 kb on - strand, within Pf1N1B4_1607at 1853.141 kb on - strand, within Pf1N1B4_1607at 1853.141 kb on - strand, within Pf1N1B4_1607at 1853.141 kb on - strand, within Pf1N1B4_1607at 1853.150 kb on + strand, within Pf1N1B4_1607at 1853.150 kb on + strand, within Pf1N1B4_1607at 1853.150 kb on + strand, within Pf1N1B4_1607at 1853.150 kb on + strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.151 kb on - strand, within Pf1N1B4_1607at 1853.167 kb on + strandat 1853.183 kb on + strandat 1853.183 kb on + strandat 1853.183 kb on + strandat 1853.184 kb on - strandat 1853.184 kb on - strandat 1853.224 kb on + strandat 1853.224 kb on + strandat 1853.224 kb on + strandat 1853.225 kb on - strandat 1853.225 kb on - strandat 1853.225 kb on - strandat 1853.227 kb on + strandat 1853.227 kb on + strandat 1853.227 kb on + strandat 1853.227 kb on + strandat 1853.227 kb on + strandat 1853.227 kb on + strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.228 kb on - strandat 1853.233 kb on + strandat 1853.233 kb on + strandat 1853.233 kb on + strandat 1853.233 kb on + strandat 1853.234 kb on - strandat 1853.234 kb on - strandat 1853.234 kb on - strandat 1853.271 kb on + strandat 1853.271 kb on + strandat 1853.272 kb on - strandat 1853.272 kb on - strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.277 kb on + strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.278 kb on - strandat 1853.515 kb on + strand, within Pf1N1B4_1608at 1853.560 kb on + strand, within Pf1N1B4_1608at 1853.561 kb on - strand, within Pf1N1B4_1608

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,850,892 - -0.5
1,851,022 + -0.9
1,851,022 + +1.0
1,851,023 - -0.9
1,851,023 - -2.5
1,851,023 - +1.6
1,851,023 - -1.3
1,851,023 - -1.7
1,851,023 - -0.7
1,851,023 - -1.0
1,851,023 - -2.0
1,851,023 - +0.3
1,851,023 - -0.7
1,851,024 + +2.6
1,851,024 + +1.3
1,851,025 - -0.7
1,851,025 - +1.3
1,851,025 - +0.3
1,851,025 - -1.3
1,851,025 - +0.0
1,851,025 - +0.9
1,851,025 - -1.1
1,851,025 - +0.9
1,851,025 - -0.7
1,851,025 - -2.2
1,851,025 - -0.6
1,852,645 - -0.4
1,852,645 - +0.4
1,852,687 + +0.3
1,852,687 + +0.3
1,852,688 - +0.3
1,852,688 - -1.0
1,852,739 + -0.1
1,852,740 - -0.4
1,852,740 - -0.7
1,852,788 + -1.7
1,852,789 - +2.9
1,852,789 - -0.1
1,852,891 + -1.3
1,852,901 + -0.7
1,852,901 + +1.3
1,852,901 + -1.4
1,852,902 - +1.8
1,852,902 - +0.3
1,852,902 - -0.0
1,852,902 - +0.5
1,852,902 - -0.3
1,852,902 - -1.3
1,852,902 - +0.9
1,852,902 - -2.3
1,852,902 - +0.3
1,853,006 + Pf1N1B4_1607 0.28 -0.4
1,853,006 + +1.1
1,853,006 + Pf1N1B4_1607 0.28 -0.3
1,853,006 + Pf1N1B4_1607 0.28 -3.8
1,853,006 + Pf1N1B4_1607 0.28 +2.0
1,853,006 + Pf1N1B4_1607 0.28 -0.0
1,853,006 + Pf1N1B4_1607 0.28 +0.7
1,853,006 + Pf1N1B4_1607 0.28 -1.3
1,853,006 + Pf1N1B4_1607 0.28 -1.5
1,853,006 + Pf1N1B4_1607 0.28 +0.6
1,853,006 + Pf1N1B4_1607 0.28 -2.0
1,853,006 + Pf1N1B4_1607 0.28 +2.3
1,853,006 + Pf1N1B4_1607 0.28 +3.1
1,853,006 + Pf1N1B4_1607 0.28 +1.4
1,853,007 - Pf1N1B4_1607 0.28 +0.8
1,853,007 - Pf1N1B4_1607 0.28 -0.4
1,853,007 - Pf1N1B4_1607 0.28 -1.4
1,853,007 - Pf1N1B4_1607 0.28 +0.1
1,853,007 - Pf1N1B4_1607 0.28 +1.9
1,853,007 - Pf1N1B4_1607 0.28 +0.3
1,853,007 - Pf1N1B4_1607 0.28 +0.8
1,853,007 - Pf1N1B4_1607 0.28 +0.3
1,853,007 - Pf1N1B4_1607 0.28 -0.3
1,853,007 - Pf1N1B4_1607 0.28 +0.7
1,853,007 - Pf1N1B4_1607 0.28 -1.7
1,853,007 - Pf1N1B4_1607 0.28 -1.3
1,853,007 - Pf1N1B4_1607 0.28 -1.5
1,853,007 - Pf1N1B4_1607 0.28 -1.3
1,853,007 - Pf1N1B4_1607 0.28 +1.3
1,853,007 - Pf1N1B4_1607 0.28 +0.0
1,853,007 - Pf1N1B4_1607 0.28 +1.9
1,853,007 - Pf1N1B4_1607 0.28 -1.7
1,853,007 - Pf1N1B4_1607 0.28 +1.0
1,853,007 - Pf1N1B4_1607 0.28 +0.0
1,853,007 - Pf1N1B4_1607 0.28 -2.5
1,853,007 - Pf1N1B4_1607 0.28 -2.0
1,853,007 - Pf1N1B4_1607 0.28 -0.7
1,853,007 - Pf1N1B4_1607 0.28 +0.7
1,853,009 - Pf1N1B4_1607 0.29 -2.6
1,853,009 - Pf1N1B4_1607 0.29 -1.0
1,853,009 - Pf1N1B4_1607 0.29 -1.3
1,853,009 - Pf1N1B4_1607 0.29 +0.3
1,853,009 - Pf1N1B4_1607 0.29 +1.2
1,853,026 - Pf1N1B4_1607 0.36 +0.8
1,853,026 - Pf1N1B4_1607 0.36 -1.3
1,853,026 - +1.3
1,853,026 - Pf1N1B4_1607 0.36 -0.3
1,853,062 + Pf1N1B4_1607 0.50 -0.3
1,853,063 - Pf1N1B4_1607 0.51 +0.1
1,853,098 + Pf1N1B4_1607 0.65 +1.5
1,853,099 - Pf1N1B4_1607 0.65 +0.0
1,853,140 + Pf1N1B4_1607 0.82 +0.6
1,853,141 - Pf1N1B4_1607 0.82 +0.6
1,853,141 - Pf1N1B4_1607 0.82 -1.5
1,853,141 - Pf1N1B4_1607 0.82 +1.8
1,853,141 - Pf1N1B4_1607 0.82 -1.7
1,853,141 - Pf1N1B4_1607 0.82 -0.7
1,853,150 + Pf1N1B4_1607 0.86 -0.3
1,853,150 + Pf1N1B4_1607 0.86 -0.1
1,853,150 + Pf1N1B4_1607 0.86 +3.5
1,853,150 + Pf1N1B4_1607 0.86 -0.1
1,853,151 - Pf1N1B4_1607 0.86 +1.6
1,853,151 - Pf1N1B4_1607 0.86 -1.4
1,853,151 - Pf1N1B4_1607 0.86 +1.0
1,853,151 - Pf1N1B4_1607 0.86 -2.0
1,853,151 - Pf1N1B4_1607 0.86 +1.3
1,853,151 - Pf1N1B4_1607 0.86 -2.0
1,853,151 - Pf1N1B4_1607 0.86 +0.9
1,853,151 - Pf1N1B4_1607 0.86 -0.9
1,853,151 - Pf1N1B4_1607 0.86 -2.5
1,853,167 + -2.3
1,853,183 + +0.7
1,853,183 + -0.3
1,853,183 + +0.1
1,853,184 - -0.7
1,853,184 - +0.5
1,853,224 + +0.3
1,853,224 + +0.3
1,853,224 + -1.3
1,853,225 - -0.7
1,853,225 - -0.5
1,853,225 - +0.1
1,853,227 + -0.6
1,853,227 + -1.7
1,853,227 + +1.9
1,853,227 + +0.3
1,853,227 + +0.3
1,853,227 + +2.6
1,853,228 - +1.3
1,853,228 - -0.3
1,853,228 - +1.3
1,853,228 - -0.1
1,853,228 - -0.2
1,853,228 - -2.0
1,853,228 - -1.7
1,853,228 - -1.0
1,853,228 - -0.7
1,853,228 - +0.3
1,853,228 - +1.3
1,853,228 - +1.6
1,853,228 - -0.0
1,853,233 + +0.2
1,853,233 + +1.9
1,853,233 + +1.9
1,853,233 + -0.5
1,853,234 - +0.3
1,853,234 - -1.0
1,853,234 - -0.3
1,853,271 + +1.3
1,853,271 + +0.9
1,853,272 - -0.7
1,853,272 - +0.3
1,853,277 + -1.7
1,853,277 + +2.6
1,853,277 + +0.9
1,853,277 + +0.3
1,853,277 + -0.1
1,853,277 + +0.5
1,853,277 + +0.0
1,853,277 + -0.4
1,853,277 + -0.7
1,853,277 + -1.8
1,853,278 - +0.4
1,853,278 - +2.1
1,853,278 - -1.7
1,853,278 - +0.4
1,853,278 - +0.3
1,853,278 - +0.1
1,853,278 - -2.1
1,853,278 - +1.9
1,853,278 - +0.1
1,853,515 + Pf1N1B4_1608 0.55 +0.3
1,853,560 + Pf1N1B4_1608 0.64 +0.4
1,853,561 - Pf1N1B4_1608 0.65 -0.7

Or see this region's nucleotide sequence