Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1491 and Pf1N1B4_1492 are separated by 100 nucleotides Pf1N1B4_1492 and Pf1N1B4_1493 overlap by 4 nucleotides Pf1N1B4_1493 and Pf1N1B4_1494 are separated by 1 nucleotides Pf1N1B4_1494 and Pf1N1B4_1495 are separated by 169 nucleotides
Pf1N1B4_1491 - Methyl-accepting chemotaxis protein, at 1,721,871 to 1,723,820
_1491
Pf1N1B4_1492 - FIG00959437: hypothetical protein, at 1,723,921 to 1,724,223
_1492
Pf1N1B4_1493 - FIG00958420: hypothetical protein, at 1,724,220 to 1,724,450
_1493
Pf1N1B4_1494 - hypothetical protein, at 1,724,452 to 1,724,571
_1494
Pf1N1B4_1495 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,724,741 to 1,726,351
_1495
Position (kb)
1723
1724
1725 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1723.082 kb on + strand, within Pf1N1B4_1491 at 1723.083 kb on - strand, within Pf1N1B4_1491 at 1723.140 kb on - strand, within Pf1N1B4_1491 at 1723.140 kb on - strand, within Pf1N1B4_1491 at 1723.140 kb on - strand, within Pf1N1B4_1491 at 1723.140 kb on - strand, within Pf1N1B4_1491 at 1723.201 kb on + strand, within Pf1N1B4_1491 at 1723.202 kb on - strand, within Pf1N1B4_1491 at 1723.202 kb on - strand, within Pf1N1B4_1491 at 1723.202 kb on - strand, within Pf1N1B4_1491 at 1723.202 kb on - strand, within Pf1N1B4_1491 at 1723.396 kb on + strand at 1723.397 kb on - strand, within Pf1N1B4_1491 at 1723.459 kb on + strand, within Pf1N1B4_1491 at 1723.459 kb on + strand, within Pf1N1B4_1491 at 1723.459 kb on + strand, within Pf1N1B4_1491 at 1723.460 kb on - strand, within Pf1N1B4_1491 at 1723.460 kb on - strand, within Pf1N1B4_1491 at 1723.460 kb on - strand, within Pf1N1B4_1491 at 1723.528 kb on + strand, within Pf1N1B4_1491 at 1723.528 kb on + strand, within Pf1N1B4_1491 at 1723.728 kb on - strand at 1723.729 kb on + strand at 1723.729 kb on + strand at 1723.730 kb on - strand at 1723.730 kb on - strand at 1723.730 kb on - strand at 1723.751 kb on + strand at 1723.799 kb on + strand at 1723.800 kb on - strand at 1723.839 kb on - strand at 1724.120 kb on - strand, within Pf1N1B4_1492 at 1724.216 kb on + strand at 1724.654 kb on - strand at 1724.659 kb on + strand at 1724.659 kb on + strand at 1724.660 kb on - strand at 1724.660 kb on - strand at 1724.660 kb on - strand at 1724.660 kb on - strand at 1724.660 kb on - strand at 1724.668 kb on + strand at 1724.679 kb on + strand at 1724.679 kb on + strand at 1724.679 kb on + strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.680 kb on - strand at 1724.734 kb on - strand at 1724.740 kb on + strand at 1724.740 kb on + strand at 1724.740 kb on + strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.741 kb on - strand at 1724.774 kb on - strand at 1724.774 kb on - strand at 1724.809 kb on - strand at 1724.809 kb on - strand at 1724.881 kb on + strand at 1724.882 kb on - strand at 1724.882 kb on - strand at 1724.882 kb on - strand at 1724.882 kb on - strand at 1724.933 kb on + strand, within Pf1N1B4_1495 at 1724.933 kb on + strand at 1725.068 kb on + strand, within Pf1N1B4_1495 at 1725.068 kb on + strand, within Pf1N1B4_1495 at 1725.068 kb on + strand, within Pf1N1B4_1495 at 1725.069 kb on - strand, within Pf1N1B4_1495 at 1725.069 kb on - strand, within Pf1N1B4_1495 at 1725.069 kb on - strand, within Pf1N1B4_1495 at 1725.069 kb on - strand, within Pf1N1B4_1495 at 1725.069 kb on - strand, within Pf1N1B4_1495 at 1725.069 kb on - strand, within Pf1N1B4_1495 at 1725.077 kb on + strand, within Pf1N1B4_1495 at 1725.077 kb on + strand, within Pf1N1B4_1495 at 1725.077 kb on + strand at 1725.077 kb on + strand, within Pf1N1B4_1495 at 1725.077 kb on + strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495 at 1725.078 kb on - strand, within Pf1N1B4_1495
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,723,082 + Pf1N1B4_1491 0.62 +0.3 1,723,083 - Pf1N1B4_1491 0.62 +1.0 1,723,140 - Pf1N1B4_1491 0.65 +0.3 1,723,140 - Pf1N1B4_1491 0.65 -0.7 1,723,140 - Pf1N1B4_1491 0.65 +1.7 1,723,140 - Pf1N1B4_1491 0.65 +0.4 1,723,201 + Pf1N1B4_1491 0.68 -2.3 1,723,202 - Pf1N1B4_1491 0.68 +0.6 1,723,202 - Pf1N1B4_1491 0.68 +0.8 1,723,202 - Pf1N1B4_1491 0.68 +0.3 1,723,202 - Pf1N1B4_1491 0.68 +0.9 1,723,396 + -1.3 1,723,397 - Pf1N1B4_1491 0.78 +2.3 1,723,459 + Pf1N1B4_1491 0.81 -1.7 1,723,459 + Pf1N1B4_1491 0.81 -0.3 1,723,459 + Pf1N1B4_1491 0.81 -2.0 1,723,460 - Pf1N1B4_1491 0.81 -0.1 1,723,460 - Pf1N1B4_1491 0.81 -0.0 1,723,460 - Pf1N1B4_1491 0.81 +3.6 1,723,528 + Pf1N1B4_1491 0.85 -1.3 1,723,528 + Pf1N1B4_1491 0.85 -1.3 1,723,728 - +1.6 1,723,729 + -0.7 1,723,729 + -0.2 1,723,730 - -1.3 1,723,730 - +0.3 1,723,730 - +0.6 1,723,751 + -0.7 1,723,799 + +1.7 1,723,800 - +2.4 1,723,839 - -0.1 1,724,120 - Pf1N1B4_1492 0.66 -1.4 1,724,216 + +0.3 1,724,654 - +1.2 1,724,659 + -0.4 1,724,659 + -1.5 1,724,660 - +2.2 1,724,660 - +0.3 1,724,660 - +1.0 1,724,660 - +0.7 1,724,660 - +0.5 1,724,668 + -2.5 1,724,679 + +1.3 1,724,679 + +0.1 1,724,679 + +1.3 1,724,680 - +1.2 1,724,680 - -2.3 1,724,680 - +0.7 1,724,680 - +1.3 1,724,680 - +0.3 1,724,680 - +0.8 1,724,680 - +2.0 1,724,680 - +1.7 1,724,680 - +0.9 1,724,680 - +0.9 1,724,680 - +2.9 1,724,680 - +0.1 1,724,680 - +2.1 1,724,680 - +2.0 1,724,680 - +1.8 1,724,680 - +1.0 1,724,680 - +1.1 1,724,734 - +0.5 1,724,740 + +0.8 1,724,740 + +0.3 1,724,740 + +0.9 1,724,741 - +2.1 1,724,741 - -1.1 1,724,741 - +0.3 1,724,741 - -2.0 1,724,741 - -0.0 1,724,741 - +1.1 1,724,741 - +0.4 1,724,741 - +3.1 1,724,774 - -0.3 1,724,774 - +2.4 1,724,809 - +1.9 1,724,809 - -0.3 1,724,881 + +0.3 1,724,882 - +2.3 1,724,882 - -0.7 1,724,882 - -0.1 1,724,882 - +1.3 1,724,933 + Pf1N1B4_1495 0.12 -2.3 1,724,933 + -0.3 1,725,068 + Pf1N1B4_1495 0.20 +1.1 1,725,068 + Pf1N1B4_1495 0.20 -0.2 1,725,068 + Pf1N1B4_1495 0.20 +1.9 1,725,069 - Pf1N1B4_1495 0.20 -0.5 1,725,069 - Pf1N1B4_1495 0.20 -0.4 1,725,069 - Pf1N1B4_1495 0.20 +1.1 1,725,069 - Pf1N1B4_1495 0.20 +0.5 1,725,069 - Pf1N1B4_1495 0.20 +0.5 1,725,069 - Pf1N1B4_1495 0.20 +1.1 1,725,077 + Pf1N1B4_1495 0.21 +1.3 1,725,077 + Pf1N1B4_1495 0.21 +0.9 1,725,077 + +0.3 1,725,077 + Pf1N1B4_1495 0.21 -1.0 1,725,077 + Pf1N1B4_1495 0.21 -0.5 1,725,078 - Pf1N1B4_1495 0.21 -1.3 1,725,078 - Pf1N1B4_1495 0.21 +2.1 1,725,078 - -0.7 1,725,078 - Pf1N1B4_1495 0.21 +1.7 1,725,078 - Pf1N1B4_1495 0.21 -0.5 1,725,078 - Pf1N1B4_1495 0.21 -0.7 1,725,078 - Pf1N1B4_1495 0.21 +0.3 1,725,078 - Pf1N1B4_1495 0.21 -0.3 1,725,078 - Pf1N1B4_1495 0.21 +1.1
Or see this region's nucleotide sequence