Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1397

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1396 and Pf1N1B4_1397 are separated by 191 nucleotidesPf1N1B4_1397 and Pf1N1B4_1398 are separated by 123 nucleotidesPf1N1B4_1398 and Pf1N1B4_1399 are separated by 19 nucleotides Pf1N1B4_1396 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 1,599,182 to 1,601,485 _1396 Pf1N1B4_1397 - Replicative DNA helicase (EC 3.6.1.-), at 1,601,677 to 1,603,071 _1397 Pf1N1B4_1398 - LSU ribosomal protein L9p, at 1,603,195 to 1,603,641 _1398 Pf1N1B4_1399 - FIG003573: hypothetical protein, at 1,603,661 to 1,604,554 _1399 Position (kb) 1601 1602 1603 1604Strain fitness (log2 ratio) -2 -1 0 1 2at 1601.124 kb on + strand, within Pf1N1B4_1396at 1601.124 kb on + strand, within Pf1N1B4_1396at 1601.124 kb on + strand, within Pf1N1B4_1396at 1601.125 kb on - strand, within Pf1N1B4_1396at 1601.125 kb on - strand, within Pf1N1B4_1396at 1601.254 kb on + strand, within Pf1N1B4_1396at 1601.254 kb on + strand, within Pf1N1B4_1396at 1601.254 kb on + strand, within Pf1N1B4_1396at 1601.340 kb on + strandat 1601.340 kb on + strandat 1601.448 kb on + strandat 1601.448 kb on + strandat 1601.531 kb on + strandat 1601.531 kb on + strandat 1601.531 kb on + strandat 1601.531 kb on + strandat 1601.532 kb on - strandat 1601.533 kb on + strandat 1601.533 kb on + strandat 1601.533 kb on + strandat 1601.533 kb on + strandat 1601.533 kb on + strandat 1601.534 kb on - strandat 1601.534 kb on - strandat 1601.534 kb on - strandat 1601.534 kb on - strandat 1601.534 kb on - strandat 1601.534 kb on - strandat 1601.534 kb on - strandat 1601.669 kb on + strandat 1601.670 kb on - strandat 1601.670 kb on - strandat 1601.678 kb on + strandat 1601.679 kb on - strandat 1601.679 kb on - strandat 1601.696 kb on + strandat 1601.697 kb on - strandat 1603.093 kb on - strandat 1603.205 kb on - strandat 1603.759 kb on - strandat 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.792 kb on - strand, within Pf1N1B4_1399at 1603.875 kb on - strand, within Pf1N1B4_1399at 1603.914 kb on - strand, within Pf1N1B4_1399at 1603.914 kb on - strand, within Pf1N1B4_1399at 1603.914 kb on - strand, within Pf1N1B4_1399at 1603.919 kb on - strand, within Pf1N1B4_1399at 1603.959 kb on - strand, within Pf1N1B4_1399at 1604.011 kb on - strand, within Pf1N1B4_1399

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,601,124 + Pf1N1B4_1396 0.84 -1.0
1,601,124 + Pf1N1B4_1396 0.84 -0.8
1,601,124 + Pf1N1B4_1396 0.84 -2.1
1,601,125 - Pf1N1B4_1396 0.84 -2.4
1,601,125 - Pf1N1B4_1396 0.84 +0.6
1,601,254 + Pf1N1B4_1396 0.90 +1.2
1,601,254 + Pf1N1B4_1396 0.90 +1.1
1,601,254 + Pf1N1B4_1396 0.90 -1.8
1,601,340 + -1.5
1,601,340 + +0.2
1,601,448 + +0.0
1,601,448 + -1.3
1,601,531 + +0.9
1,601,531 + -1.0
1,601,531 + -1.1
1,601,531 + +0.2
1,601,532 - +0.3
1,601,533 + +0.5
1,601,533 + -2.4
1,601,533 + -1.8
1,601,533 + +1.2
1,601,533 + +0.2
1,601,534 - +1.4
1,601,534 - -0.8
1,601,534 - -1.0
1,601,534 - +1.8
1,601,534 - -1.8
1,601,534 - -0.8
1,601,534 - +0.8
1,601,669 + +0.1
1,601,670 - +2.2
1,601,670 - +0.2
1,601,678 + +0.0
1,601,679 - +0.4
1,601,679 - -1.4
1,601,696 + -1.1
1,601,697 - +0.4
1,603,093 - -1.4
1,603,205 - +0.2
1,603,759 - -1.4
1,603,792 - Pf1N1B4_1399 0.15 -0.5
1,603,792 - Pf1N1B4_1399 0.15 -1.8
1,603,792 - Pf1N1B4_1399 0.15 -0.8
1,603,792 - Pf1N1B4_1399 0.15 -0.4
1,603,792 - Pf1N1B4_1399 0.15 +0.9
1,603,792 - Pf1N1B4_1399 0.15 +0.8
1,603,792 - Pf1N1B4_1399 0.15 -1.4
1,603,792 - Pf1N1B4_1399 0.15 -1.1
1,603,875 - Pf1N1B4_1399 0.24 -0.2
1,603,914 - Pf1N1B4_1399 0.28 +0.2
1,603,914 - Pf1N1B4_1399 0.28 -1.8
1,603,914 - Pf1N1B4_1399 0.28 +0.6
1,603,919 - Pf1N1B4_1399 0.29 +0.2
1,603,959 - Pf1N1B4_1399 0.33 -0.2
1,604,011 - Pf1N1B4_1399 0.39 +0.2

Or see this region's nucleotide sequence