Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1251 and Pf1N1B4_1252 are separated by 81 nucleotides Pf1N1B4_1252 and Pf1N1B4_1253 are separated by 222 nucleotides
Pf1N1B4_1251 - 2-Oxobutyrate oxidase, putative, at 1,429,802 to 1,430,767
_1251
Pf1N1B4_1252 - Adenosine deaminase (EC 3.5.4.4), at 1,430,849 to 1,431,802
_1252
Pf1N1B4_1253 - Niacin transporter NiaP, at 1,432,025 to 1,433,407
_1253
Position (kb)
1430
1431
1432 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1429.913 kb on + strand, within Pf1N1B4_1251 at 1429.913 kb on + strand, within Pf1N1B4_1251 at 1429.914 kb on - strand at 1429.914 kb on - strand, within Pf1N1B4_1251 at 1429.914 kb on - strand, within Pf1N1B4_1251 at 1429.915 kb on + strand, within Pf1N1B4_1251 at 1429.916 kb on - strand, within Pf1N1B4_1251 at 1430.219 kb on + strand, within Pf1N1B4_1251 at 1430.219 kb on + strand, within Pf1N1B4_1251 at 1430.219 kb on + strand, within Pf1N1B4_1251 at 1430.219 kb on + strand, within Pf1N1B4_1251 at 1430.219 kb on + strand, within Pf1N1B4_1251 at 1430.219 kb on + strand, within Pf1N1B4_1251 at 1430.220 kb on - strand, within Pf1N1B4_1251 at 1430.220 kb on - strand, within Pf1N1B4_1251 at 1430.220 kb on - strand, within Pf1N1B4_1251 at 1430.424 kb on - strand at 1430.685 kb on - strand at 1430.685 kb on - strand at 1430.685 kb on - strand at 1430.735 kb on + strand at 1430.735 kb on + strand at 1430.735 kb on + strand at 1430.735 kb on + strand at 1430.735 kb on + strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.736 kb on - strand at 1430.766 kb on - strand at 1430.766 kb on - strand at 1430.813 kb on + strand at 1430.813 kb on + strand at 1430.813 kb on + strand at 1430.813 kb on + strand at 1430.814 kb on - strand at 1430.814 kb on - strand at 1430.814 kb on - strand at 1430.814 kb on - strand at 1430.852 kb on + strand at 1430.853 kb on - strand at 1430.853 kb on - strand at 1430.993 kb on + strand, within Pf1N1B4_1252 at 1430.993 kb on + strand, within Pf1N1B4_1252 at 1430.994 kb on - strand, within Pf1N1B4_1252 at 1431.029 kb on + strand, within Pf1N1B4_1252 at 1431.029 kb on + strand, within Pf1N1B4_1252 at 1431.029 kb on + strand, within Pf1N1B4_1252 at 1431.030 kb on - strand, within Pf1N1B4_1252 at 1431.030 kb on - strand, within Pf1N1B4_1252 at 1431.030 kb on - strand at 1431.033 kb on - strand at 1431.033 kb on - strand, within Pf1N1B4_1252 at 1431.071 kb on + strand, within Pf1N1B4_1252 at 1431.089 kb on + strand, within Pf1N1B4_1252 at 1431.455 kb on + strand, within Pf1N1B4_1252 at 1431.456 kb on - strand, within Pf1N1B4_1252 at 1431.684 kb on - strand, within Pf1N1B4_1252 at 1431.695 kb on + strand, within Pf1N1B4_1252 at 1431.696 kb on - strand, within Pf1N1B4_1252 at 1431.696 kb on - strand, within Pf1N1B4_1252 at 1431.723 kb on - strand at 1431.723 kb on - strand at 1431.800 kb on + strand at 1431.801 kb on - strand at 1431.833 kb on + strand at 1431.833 kb on + strand at 1431.833 kb on + strand at 1431.834 kb on - strand at 1431.834 kb on - strand at 1431.841 kb on + strand at 1431.841 kb on + strand at 1431.841 kb on + strand at 1431.841 kb on + strand at 1431.841 kb on + strand at 1431.841 kb on + strand at 1431.841 kb on + strand at 1431.842 kb on - strand at 1431.842 kb on - strand at 1431.842 kb on - strand at 1431.842 kb on - strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.847 kb on + strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.848 kb on - strand at 1431.891 kb on + strand at 1431.891 kb on + strand at 1431.891 kb on + strand at 1431.891 kb on + strand at 1431.892 kb on - strand at 1431.892 kb on - strand at 1431.892 kb on - strand at 1431.901 kb on + strand at 1431.902 kb on - strand at 1431.913 kb on + strand at 1431.913 kb on + strand at 1431.913 kb on + strand at 1431.914 kb on - strand at 1431.921 kb on - strand at 1431.921 kb on - strand at 1431.921 kb on - strand at 1431.921 kb on - strand at 1432.169 kb on + strand, within Pf1N1B4_1253 at 1432.203 kb on - strand, within Pf1N1B4_1253 at 1432.258 kb on - strand, within Pf1N1B4_1253 at 1432.272 kb on + strand, within Pf1N1B4_1253 at 1432.273 kb on - strand at 1432.273 kb on - strand, within Pf1N1B4_1253 at 1432.273 kb on - strand, within Pf1N1B4_1253 at 1432.273 kb on - strand, within Pf1N1B4_1253 at 1432.273 kb on - strand, within Pf1N1B4_1253 at 1432.273 kb on - strand, within Pf1N1B4_1253 at 1432.273 kb on - strand, within Pf1N1B4_1253 at 1432.279 kb on - strand, within Pf1N1B4_1253 at 1432.279 kb on - strand, within Pf1N1B4_1253 at 1432.331 kb on - strand, within Pf1N1B4_1253 at 1432.331 kb on - strand, within Pf1N1B4_1253 at 1432.375 kb on - strand, within Pf1N1B4_1253 at 1432.500 kb on + strand, within Pf1N1B4_1253 at 1432.501 kb on - strand, within Pf1N1B4_1253 at 1432.501 kb on - strand, within Pf1N1B4_1253 at 1432.503 kb on + strand, within Pf1N1B4_1253 at 1432.503 kb on + strand, within Pf1N1B4_1253 at 1432.504 kb on - strand, within Pf1N1B4_1253 at 1432.504 kb on - strand, within Pf1N1B4_1253 at 1432.504 kb on - strand, within Pf1N1B4_1253 at 1432.504 kb on - strand, within Pf1N1B4_1253 at 1432.570 kb on - strand, within Pf1N1B4_1253
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,429,913 + Pf1N1B4_1251 0.11 +0.6 1,429,913 + Pf1N1B4_1251 0.11 -0.2 1,429,914 - +0.2 1,429,914 - Pf1N1B4_1251 0.12 -1.4 1,429,914 - Pf1N1B4_1251 0.12 +0.2 1,429,915 + Pf1N1B4_1251 0.12 +1.4 1,429,916 - Pf1N1B4_1251 0.12 +2.2 1,430,219 + Pf1N1B4_1251 0.43 -0.0 1,430,219 + Pf1N1B4_1251 0.43 -0.4 1,430,219 + Pf1N1B4_1251 0.43 -0.8 1,430,219 + Pf1N1B4_1251 0.43 -1.8 1,430,219 + Pf1N1B4_1251 0.43 +1.2 1,430,219 + Pf1N1B4_1251 0.43 -0.1 1,430,220 - Pf1N1B4_1251 0.43 +1.2 1,430,220 - Pf1N1B4_1251 0.43 -0.2 1,430,220 - Pf1N1B4_1251 0.43 +0.2 1,430,424 - -1.8 1,430,685 - +0.2 1,430,685 - +1.3 1,430,685 - +1.0 1,430,735 + -0.2 1,430,735 + +1.2 1,430,735 + +0.8 1,430,735 + -1.8 1,430,735 + -0.4 1,430,736 - +0.6 1,430,736 - +0.8 1,430,736 - +0.3 1,430,736 - -1.2 1,430,736 - -0.1 1,430,736 - +1.1 1,430,736 - -0.2 1,430,736 - +2.2 1,430,736 - -1.6 1,430,736 - -1.6 1,430,766 - -1.2 1,430,766 - +0.1 1,430,813 + +1.2 1,430,813 + -0.5 1,430,813 + +1.2 1,430,813 + -1.4 1,430,814 - +1.3 1,430,814 - +1.3 1,430,814 - -1.4 1,430,814 - -1.8 1,430,852 + -1.0 1,430,853 - -2.2 1,430,853 - +0.7 1,430,993 + Pf1N1B4_1252 0.15 -1.8 1,430,993 + Pf1N1B4_1252 0.15 +0.4 1,430,994 - Pf1N1B4_1252 0.15 -1.8 1,431,029 + Pf1N1B4_1252 0.19 -1.6 1,431,029 + Pf1N1B4_1252 0.19 -0.4 1,431,029 + Pf1N1B4_1252 0.19 -3.7 1,431,030 - Pf1N1B4_1252 0.19 -3.0 1,431,030 - Pf1N1B4_1252 0.19 -0.8 1,431,030 - +1.2 1,431,033 - -1.8 1,431,033 - Pf1N1B4_1252 0.19 +1.2 1,431,071 + Pf1N1B4_1252 0.23 -1.6 1,431,089 + Pf1N1B4_1252 0.25 -0.8 1,431,455 + Pf1N1B4_1252 0.64 -0.8 1,431,456 - Pf1N1B4_1252 0.64 -0.8 1,431,684 - Pf1N1B4_1252 0.88 +1.2 1,431,695 + Pf1N1B4_1252 0.89 -0.7 1,431,696 - Pf1N1B4_1252 0.89 -0.4 1,431,696 - Pf1N1B4_1252 0.89 +0.2 1,431,723 - +0.8 1,431,723 - +0.5 1,431,800 + +0.2 1,431,801 - +0.2 1,431,833 + -1.2 1,431,833 + -1.4 1,431,833 + -2.2 1,431,834 - -0.6 1,431,834 - -0.6 1,431,841 + -0.6 1,431,841 + -0.7 1,431,841 + -0.1 1,431,841 + -0.8 1,431,841 + +0.2 1,431,841 + +1.2 1,431,841 + +0.2 1,431,842 - -0.8 1,431,842 - -1.8 1,431,842 - -1.8 1,431,842 - +0.2 1,431,847 + -2.6 1,431,847 + -0.6 1,431,847 + +1.9 1,431,847 + -2.4 1,431,847 + +0.6 1,431,847 + -0.0 1,431,847 + -0.8 1,431,847 + -1.1 1,431,847 + +0.2 1,431,847 + +0.2 1,431,848 - -0.1 1,431,848 - +0.9 1,431,848 - -2.4 1,431,848 - -0.1 1,431,848 - +0.6 1,431,848 - -1.4 1,431,848 - +0.4 1,431,848 - +1.7 1,431,848 - +0.2 1,431,848 - +0.2 1,431,848 - +2.1 1,431,848 - +2.2 1,431,891 + -0.0 1,431,891 + +0.2 1,431,891 + +0.2 1,431,891 + +3.2 1,431,892 - +0.2 1,431,892 - +0.5 1,431,892 - +1.0 1,431,901 + -0.2 1,431,902 - +1.2 1,431,913 + -0.2 1,431,913 + -1.8 1,431,913 + +0.2 1,431,914 - -0.2 1,431,921 - -2.2 1,431,921 - -0.3 1,431,921 - +0.2 1,431,921 - -0.4 1,432,169 + Pf1N1B4_1253 0.10 -1.4 1,432,203 - Pf1N1B4_1253 0.13 +0.5 1,432,258 - Pf1N1B4_1253 0.17 +1.8 1,432,272 + Pf1N1B4_1253 0.18 +0.2 1,432,273 - +0.2 1,432,273 - Pf1N1B4_1253 0.18 +0.4 1,432,273 - Pf1N1B4_1253 0.18 -1.2 1,432,273 - Pf1N1B4_1253 0.18 -2.2 1,432,273 - Pf1N1B4_1253 0.18 -1.4 1,432,273 - Pf1N1B4_1253 0.18 -0.0 1,432,273 - Pf1N1B4_1253 0.18 +1.5 1,432,279 - Pf1N1B4_1253 0.18 +1.2 1,432,279 - Pf1N1B4_1253 0.18 -2.0 1,432,331 - Pf1N1B4_1253 0.22 +0.2 1,432,331 - Pf1N1B4_1253 0.22 +0.1 1,432,375 - Pf1N1B4_1253 0.25 -1.5 1,432,500 + Pf1N1B4_1253 0.34 +2.2 1,432,501 - Pf1N1B4_1253 0.34 +0.8 1,432,501 - Pf1N1B4_1253 0.34 +1.5 1,432,503 + Pf1N1B4_1253 0.35 +1.4 1,432,503 + Pf1N1B4_1253 0.35 +0.5 1,432,504 - Pf1N1B4_1253 0.35 +1.5 1,432,504 - Pf1N1B4_1253 0.35 +0.2 1,432,504 - Pf1N1B4_1253 0.35 +0.2 1,432,504 - Pf1N1B4_1253 0.35 -1.4 1,432,570 - Pf1N1B4_1253 0.39 -0.8
Or see this region's nucleotide sequence