Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1252

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1251 and Pf1N1B4_1252 are separated by 81 nucleotidesPf1N1B4_1252 and Pf1N1B4_1253 are separated by 222 nucleotides Pf1N1B4_1251 - 2-Oxobutyrate oxidase, putative, at 1,429,802 to 1,430,767 _1251 Pf1N1B4_1252 - Adenosine deaminase (EC 3.5.4.4), at 1,430,849 to 1,431,802 _1252 Pf1N1B4_1253 - Niacin transporter NiaP, at 1,432,025 to 1,433,407 _1253 Position (kb) 1430 1431 1432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1429.913 kb on + strand, within Pf1N1B4_1251at 1429.913 kb on + strand, within Pf1N1B4_1251at 1429.914 kb on - strandat 1429.914 kb on - strand, within Pf1N1B4_1251at 1429.914 kb on - strand, within Pf1N1B4_1251at 1429.915 kb on + strand, within Pf1N1B4_1251at 1429.916 kb on - strand, within Pf1N1B4_1251at 1430.219 kb on + strand, within Pf1N1B4_1251at 1430.219 kb on + strand, within Pf1N1B4_1251at 1430.219 kb on + strand, within Pf1N1B4_1251at 1430.219 kb on + strand, within Pf1N1B4_1251at 1430.219 kb on + strand, within Pf1N1B4_1251at 1430.219 kb on + strand, within Pf1N1B4_1251at 1430.220 kb on - strand, within Pf1N1B4_1251at 1430.220 kb on - strand, within Pf1N1B4_1251at 1430.220 kb on - strand, within Pf1N1B4_1251at 1430.424 kb on - strandat 1430.685 kb on - strandat 1430.685 kb on - strandat 1430.685 kb on - strandat 1430.735 kb on + strandat 1430.735 kb on + strandat 1430.735 kb on + strandat 1430.735 kb on + strandat 1430.735 kb on + strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.736 kb on - strandat 1430.766 kb on - strandat 1430.766 kb on - strandat 1430.813 kb on + strandat 1430.813 kb on + strandat 1430.813 kb on + strandat 1430.813 kb on + strandat 1430.814 kb on - strandat 1430.814 kb on - strandat 1430.814 kb on - strandat 1430.814 kb on - strandat 1430.852 kb on + strandat 1430.853 kb on - strandat 1430.853 kb on - strandat 1430.993 kb on + strand, within Pf1N1B4_1252at 1430.993 kb on + strand, within Pf1N1B4_1252at 1430.994 kb on - strand, within Pf1N1B4_1252at 1431.029 kb on + strand, within Pf1N1B4_1252at 1431.029 kb on + strand, within Pf1N1B4_1252at 1431.029 kb on + strand, within Pf1N1B4_1252at 1431.030 kb on - strand, within Pf1N1B4_1252at 1431.030 kb on - strand, within Pf1N1B4_1252at 1431.030 kb on - strandat 1431.033 kb on - strandat 1431.033 kb on - strand, within Pf1N1B4_1252at 1431.071 kb on + strand, within Pf1N1B4_1252at 1431.089 kb on + strand, within Pf1N1B4_1252at 1431.455 kb on + strand, within Pf1N1B4_1252at 1431.456 kb on - strand, within Pf1N1B4_1252at 1431.684 kb on - strand, within Pf1N1B4_1252at 1431.695 kb on + strand, within Pf1N1B4_1252at 1431.696 kb on - strand, within Pf1N1B4_1252at 1431.696 kb on - strand, within Pf1N1B4_1252at 1431.723 kb on - strandat 1431.723 kb on - strandat 1431.800 kb on + strandat 1431.801 kb on - strandat 1431.833 kb on + strandat 1431.833 kb on + strandat 1431.833 kb on + strandat 1431.834 kb on - strandat 1431.834 kb on - strandat 1431.841 kb on + strandat 1431.841 kb on + strandat 1431.841 kb on + strandat 1431.841 kb on + strandat 1431.841 kb on + strandat 1431.841 kb on + strandat 1431.841 kb on + strandat 1431.842 kb on - strandat 1431.842 kb on - strandat 1431.842 kb on - strandat 1431.842 kb on - strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.847 kb on + strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.848 kb on - strandat 1431.891 kb on + strandat 1431.891 kb on + strandat 1431.891 kb on + strandat 1431.891 kb on + strandat 1431.892 kb on - strandat 1431.892 kb on - strandat 1431.892 kb on - strandat 1431.901 kb on + strandat 1431.902 kb on - strandat 1431.913 kb on + strandat 1431.913 kb on + strandat 1431.913 kb on + strandat 1431.914 kb on - strandat 1431.921 kb on - strandat 1431.921 kb on - strandat 1431.921 kb on - strandat 1431.921 kb on - strandat 1432.169 kb on + strand, within Pf1N1B4_1253at 1432.203 kb on - strand, within Pf1N1B4_1253at 1432.258 kb on - strand, within Pf1N1B4_1253at 1432.272 kb on + strand, within Pf1N1B4_1253at 1432.273 kb on - strandat 1432.273 kb on - strand, within Pf1N1B4_1253at 1432.273 kb on - strand, within Pf1N1B4_1253at 1432.273 kb on - strand, within Pf1N1B4_1253at 1432.273 kb on - strand, within Pf1N1B4_1253at 1432.273 kb on - strand, within Pf1N1B4_1253at 1432.273 kb on - strand, within Pf1N1B4_1253at 1432.279 kb on - strand, within Pf1N1B4_1253at 1432.279 kb on - strand, within Pf1N1B4_1253at 1432.331 kb on - strand, within Pf1N1B4_1253at 1432.331 kb on - strand, within Pf1N1B4_1253at 1432.375 kb on - strand, within Pf1N1B4_1253at 1432.500 kb on + strand, within Pf1N1B4_1253at 1432.501 kb on - strand, within Pf1N1B4_1253at 1432.501 kb on - strand, within Pf1N1B4_1253at 1432.503 kb on + strand, within Pf1N1B4_1253at 1432.503 kb on + strand, within Pf1N1B4_1253at 1432.504 kb on - strand, within Pf1N1B4_1253at 1432.504 kb on - strand, within Pf1N1B4_1253at 1432.504 kb on - strand, within Pf1N1B4_1253at 1432.504 kb on - strand, within Pf1N1B4_1253at 1432.570 kb on - strand, within Pf1N1B4_1253

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,429,913 + Pf1N1B4_1251 0.11 +0.6
1,429,913 + Pf1N1B4_1251 0.11 -0.2
1,429,914 - +0.2
1,429,914 - Pf1N1B4_1251 0.12 -1.4
1,429,914 - Pf1N1B4_1251 0.12 +0.2
1,429,915 + Pf1N1B4_1251 0.12 +1.4
1,429,916 - Pf1N1B4_1251 0.12 +2.2
1,430,219 + Pf1N1B4_1251 0.43 -0.0
1,430,219 + Pf1N1B4_1251 0.43 -0.4
1,430,219 + Pf1N1B4_1251 0.43 -0.8
1,430,219 + Pf1N1B4_1251 0.43 -1.8
1,430,219 + Pf1N1B4_1251 0.43 +1.2
1,430,219 + Pf1N1B4_1251 0.43 -0.1
1,430,220 - Pf1N1B4_1251 0.43 +1.2
1,430,220 - Pf1N1B4_1251 0.43 -0.2
1,430,220 - Pf1N1B4_1251 0.43 +0.2
1,430,424 - -1.8
1,430,685 - +0.2
1,430,685 - +1.3
1,430,685 - +1.0
1,430,735 + -0.2
1,430,735 + +1.2
1,430,735 + +0.8
1,430,735 + -1.8
1,430,735 + -0.4
1,430,736 - +0.6
1,430,736 - +0.8
1,430,736 - +0.3
1,430,736 - -1.2
1,430,736 - -0.1
1,430,736 - +1.1
1,430,736 - -0.2
1,430,736 - +2.2
1,430,736 - -1.6
1,430,736 - -1.6
1,430,766 - -1.2
1,430,766 - +0.1
1,430,813 + +1.2
1,430,813 + -0.5
1,430,813 + +1.2
1,430,813 + -1.4
1,430,814 - +1.3
1,430,814 - +1.3
1,430,814 - -1.4
1,430,814 - -1.8
1,430,852 + -1.0
1,430,853 - -2.2
1,430,853 - +0.7
1,430,993 + Pf1N1B4_1252 0.15 -1.8
1,430,993 + Pf1N1B4_1252 0.15 +0.4
1,430,994 - Pf1N1B4_1252 0.15 -1.8
1,431,029 + Pf1N1B4_1252 0.19 -1.6
1,431,029 + Pf1N1B4_1252 0.19 -0.4
1,431,029 + Pf1N1B4_1252 0.19 -3.7
1,431,030 - Pf1N1B4_1252 0.19 -3.0
1,431,030 - Pf1N1B4_1252 0.19 -0.8
1,431,030 - +1.2
1,431,033 - -1.8
1,431,033 - Pf1N1B4_1252 0.19 +1.2
1,431,071 + Pf1N1B4_1252 0.23 -1.6
1,431,089 + Pf1N1B4_1252 0.25 -0.8
1,431,455 + Pf1N1B4_1252 0.64 -0.8
1,431,456 - Pf1N1B4_1252 0.64 -0.8
1,431,684 - Pf1N1B4_1252 0.88 +1.2
1,431,695 + Pf1N1B4_1252 0.89 -0.7
1,431,696 - Pf1N1B4_1252 0.89 -0.4
1,431,696 - Pf1N1B4_1252 0.89 +0.2
1,431,723 - +0.8
1,431,723 - +0.5
1,431,800 + +0.2
1,431,801 - +0.2
1,431,833 + -1.2
1,431,833 + -1.4
1,431,833 + -2.2
1,431,834 - -0.6
1,431,834 - -0.6
1,431,841 + -0.6
1,431,841 + -0.7
1,431,841 + -0.1
1,431,841 + -0.8
1,431,841 + +0.2
1,431,841 + +1.2
1,431,841 + +0.2
1,431,842 - -0.8
1,431,842 - -1.8
1,431,842 - -1.8
1,431,842 - +0.2
1,431,847 + -2.6
1,431,847 + -0.6
1,431,847 + +1.9
1,431,847 + -2.4
1,431,847 + +0.6
1,431,847 + -0.0
1,431,847 + -0.8
1,431,847 + -1.1
1,431,847 + +0.2
1,431,847 + +0.2
1,431,848 - -0.1
1,431,848 - +0.9
1,431,848 - -2.4
1,431,848 - -0.1
1,431,848 - +0.6
1,431,848 - -1.4
1,431,848 - +0.4
1,431,848 - +1.7
1,431,848 - +0.2
1,431,848 - +0.2
1,431,848 - +2.1
1,431,848 - +2.2
1,431,891 + -0.0
1,431,891 + +0.2
1,431,891 + +0.2
1,431,891 + +3.2
1,431,892 - +0.2
1,431,892 - +0.5
1,431,892 - +1.0
1,431,901 + -0.2
1,431,902 - +1.2
1,431,913 + -0.2
1,431,913 + -1.8
1,431,913 + +0.2
1,431,914 - -0.2
1,431,921 - -2.2
1,431,921 - -0.3
1,431,921 - +0.2
1,431,921 - -0.4
1,432,169 + Pf1N1B4_1253 0.10 -1.4
1,432,203 - Pf1N1B4_1253 0.13 +0.5
1,432,258 - Pf1N1B4_1253 0.17 +1.8
1,432,272 + Pf1N1B4_1253 0.18 +0.2
1,432,273 - +0.2
1,432,273 - Pf1N1B4_1253 0.18 +0.4
1,432,273 - Pf1N1B4_1253 0.18 -1.2
1,432,273 - Pf1N1B4_1253 0.18 -2.2
1,432,273 - Pf1N1B4_1253 0.18 -1.4
1,432,273 - Pf1N1B4_1253 0.18 -0.0
1,432,273 - Pf1N1B4_1253 0.18 +1.5
1,432,279 - Pf1N1B4_1253 0.18 +1.2
1,432,279 - Pf1N1B4_1253 0.18 -2.0
1,432,331 - Pf1N1B4_1253 0.22 +0.2
1,432,331 - Pf1N1B4_1253 0.22 +0.1
1,432,375 - Pf1N1B4_1253 0.25 -1.5
1,432,500 + Pf1N1B4_1253 0.34 +2.2
1,432,501 - Pf1N1B4_1253 0.34 +0.8
1,432,501 - Pf1N1B4_1253 0.34 +1.5
1,432,503 + Pf1N1B4_1253 0.35 +1.4
1,432,503 + Pf1N1B4_1253 0.35 +0.5
1,432,504 - Pf1N1B4_1253 0.35 +1.5
1,432,504 - Pf1N1B4_1253 0.35 +0.2
1,432,504 - Pf1N1B4_1253 0.35 +0.2
1,432,504 - Pf1N1B4_1253 0.35 -1.4
1,432,570 - Pf1N1B4_1253 0.39 -0.8

Or see this region's nucleotide sequence