Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1194

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1193 and Pf1N1B4_1194 are separated by 35 nucleotidesPf1N1B4_1194 and Pf1N1B4_1195 are separated by 349 nucleotides Pf1N1B4_1193 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 1,347,996 to 1,348,370 _1193 Pf1N1B4_1194 - hypothetical protein, at 1,348,406 to 1,348,663 _1194 Pf1N1B4_1195 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 1,349,013 to 1,349,381 _1195 Position (kb) 1348 1349Strain fitness (log2 ratio) -2 -1 0 1 2at 1347.411 kb on + strandat 1347.411 kb on + strandat 1347.411 kb on + strandat 1347.617 kb on - strandat 1347.617 kb on - strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.626 kb on + strandat 1347.627 kb on - strandat 1347.665 kb on - strandat 1347.745 kb on - strandat 1347.745 kb on - strandat 1347.806 kb on + strandat 1347.806 kb on + strandat 1347.806 kb on + strandat 1347.806 kb on + strandat 1347.806 kb on + strandat 1347.806 kb on + strandat 1347.807 kb on - strandat 1347.807 kb on - strandat 1347.807 kb on - strandat 1347.807 kb on - strandat 1347.807 kb on - strandat 1347.813 kb on + strandat 1347.813 kb on + strandat 1347.813 kb on + strandat 1347.813 kb on + strandat 1347.814 kb on - strandat 1347.814 kb on - strandat 1347.840 kb on + strandat 1347.840 kb on + strandat 1347.840 kb on + strandat 1347.841 kb on - strandat 1347.841 kb on - strandat 1347.967 kb on - strandat 1348.132 kb on + strand, within Pf1N1B4_1193at 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.415 kb on + strandat 1348.416 kb on - strandat 1348.416 kb on - strandat 1348.416 kb on - strandat 1348.416 kb on - strandat 1348.416 kb on - strandat 1348.416 kb on - strandat 1348.506 kb on - strand, within Pf1N1B4_1194at 1348.562 kb on + strand, within Pf1N1B4_1194at 1348.563 kb on - strand, within Pf1N1B4_1194at 1348.587 kb on + strand, within Pf1N1B4_1194at 1348.587 kb on + strand, within Pf1N1B4_1194at 1348.678 kb on + strandat 1348.678 kb on + strandat 1348.679 kb on - strandat 1348.709 kb on + strandat 1348.709 kb on + strandat 1348.742 kb on + strandat 1348.742 kb on + strandat 1348.742 kb on + strandat 1348.742 kb on + strandat 1348.742 kb on + strandat 1348.743 kb on - strandat 1348.743 kb on - strandat 1348.743 kb on - strandat 1348.743 kb on - strandat 1348.743 kb on - strandat 1348.757 kb on + strandat 1348.757 kb on + strandat 1348.758 kb on - strandat 1348.758 kb on - strandat 1348.758 kb on - strandat 1348.773 kb on + strandat 1348.774 kb on - strandat 1348.774 kb on - strandat 1348.778 kb on + strandat 1348.779 kb on - strandat 1348.779 kb on - strandat 1348.779 kb on - strandat 1348.779 kb on - strandat 1348.779 kb on - strandat 1348.779 kb on - strandat 1348.839 kb on - strandat 1348.839 kb on - strandat 1348.850 kb on + strandat 1348.850 kb on + strandat 1348.851 kb on - strandat 1348.851 kb on - strandat 1348.851 kb on - strandat 1348.851 kb on - strandat 1348.927 kb on + strandat 1348.927 kb on + strandat 1348.928 kb on - strandat 1349.035 kb on + strandat 1349.035 kb on + strandat 1349.036 kb on - strandat 1349.036 kb on - strandat 1349.036 kb on - strandat 1349.399 kb on - strandat 1349.399 kb on - strandat 1349.399 kb on - strandat 1349.418 kb on + strandat 1349.419 kb on - strandat 1349.478 kb on + strandat 1349.478 kb on + strandat 1349.478 kb on + strandat 1349.478 kb on + strandat 1349.478 kb on + strandat 1349.479 kb on - strandat 1349.479 kb on - strandat 1349.479 kb on - strandat 1349.479 kb on - strandat 1349.479 kb on - strandat 1349.479 kb on - strandat 1349.479 kb on - strandat 1349.497 kb on + strandat 1349.497 kb on + strandat 1349.497 kb on + strandat 1349.498 kb on - strandat 1349.498 kb on - strandat 1349.507 kb on + strandat 1349.508 kb on - strandat 1349.508 kb on - strandat 1349.508 kb on - strandat 1349.603 kb on + strandat 1349.603 kb on + strandat 1349.603 kb on + strandat 1349.603 kb on + strandat 1349.603 kb on + strandat 1349.603 kb on + strandat 1349.604 kb on - strandat 1349.604 kb on - strandat 1349.604 kb on - strandat 1349.604 kb on - strandat 1349.604 kb on - strandat 1349.604 kb on - strandat 1349.631 kb on - strandat 1349.631 kb on - strandat 1349.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,347,411 + -0.7
1,347,411 + -2.2
1,347,411 + -0.5
1,347,617 - -0.3
1,347,617 - +0.2
1,347,626 + +0.0
1,347,626 + -1.0
1,347,626 + +1.0
1,347,626 + -0.3
1,347,626 + -0.4
1,347,626 + -0.8
1,347,626 + -2.2
1,347,626 + -1.4
1,347,626 + -1.2
1,347,626 + -0.5
1,347,626 + -0.3
1,347,626 + +1.2
1,347,626 + +0.2
1,347,626 + +1.2
1,347,627 - +1.5
1,347,665 - -0.6
1,347,745 - -0.4
1,347,745 - -1.4
1,347,806 + +0.2
1,347,806 + -1.8
1,347,806 + -1.4
1,347,806 + -1.8
1,347,806 + +1.2
1,347,806 + -2.2
1,347,807 - -1.8
1,347,807 - -0.4
1,347,807 - -1.7
1,347,807 - -1.0
1,347,807 - +1.2
1,347,813 + +0.4
1,347,813 + +0.2
1,347,813 + +0.2
1,347,813 + -2.7
1,347,814 - +1.2
1,347,814 - +0.9
1,347,840 + +1.5
1,347,840 + +0.2
1,347,840 + +1.3
1,347,841 - -0.5
1,347,841 - +0.7
1,347,967 - +1.3
1,348,132 + Pf1N1B4_1193 0.36 +0.7
1,348,415 + +0.6
1,348,415 + -0.3
1,348,415 + +0.2
1,348,415 + -1.4
1,348,415 + -1.6
1,348,415 + +0.7
1,348,415 + +1.0
1,348,415 + -0.6
1,348,415 + -0.4
1,348,416 - +0.6
1,348,416 - +0.6
1,348,416 - +1.2
1,348,416 - +0.2
1,348,416 - +0.7
1,348,416 - -0.8
1,348,506 - Pf1N1B4_1194 0.39 -0.2
1,348,562 + Pf1N1B4_1194 0.60 -1.7
1,348,563 - Pf1N1B4_1194 0.61 -2.2
1,348,587 + Pf1N1B4_1194 0.70 -0.3
1,348,587 + Pf1N1B4_1194 0.70 -1.8
1,348,678 + +0.2
1,348,678 + -1.7
1,348,679 - -1.4
1,348,709 + +0.7
1,348,709 + -1.7
1,348,742 + -0.8
1,348,742 + +0.2
1,348,742 + +1.2
1,348,742 + -0.3
1,348,742 + -0.8
1,348,743 - -2.2
1,348,743 - -1.8
1,348,743 - -0.8
1,348,743 - +0.9
1,348,743 - +0.2
1,348,757 + -0.7
1,348,757 + +2.0
1,348,758 - -1.4
1,348,758 - +0.2
1,348,758 - +0.2
1,348,773 + +1.7
1,348,774 - -0.2
1,348,774 - -0.3
1,348,778 + +0.8
1,348,779 - -0.4
1,348,779 - -2.4
1,348,779 - -2.2
1,348,779 - -0.3
1,348,779 - -0.8
1,348,779 - +0.2
1,348,839 - +0.7
1,348,839 - +1.5
1,348,850 + +0.2
1,348,850 + -0.3
1,348,851 - -0.8
1,348,851 - +0.9
1,348,851 - +0.2
1,348,851 - -0.4
1,348,927 + +0.2
1,348,927 + -1.4
1,348,928 - -1.1
1,349,035 + +0.2
1,349,035 + -1.4
1,349,036 - -1.2
1,349,036 - -0.8
1,349,036 - +0.1
1,349,399 - -0.3
1,349,399 - +0.8
1,349,399 - -0.3
1,349,418 + -0.8
1,349,419 - +0.2
1,349,478 + +2.0
1,349,478 + -1.4
1,349,478 + -2.4
1,349,478 + +0.2
1,349,478 + -0.4
1,349,479 - +0.2
1,349,479 - -1.2
1,349,479 - +0.7
1,349,479 - +0.4
1,349,479 - +0.2
1,349,479 - +0.2
1,349,479 - +1.7
1,349,497 + -1.2
1,349,497 + -2.0
1,349,497 + -1.4
1,349,498 - -0.4
1,349,498 - -0.4
1,349,507 + +1.2
1,349,508 - -1.8
1,349,508 - -1.8
1,349,508 - +1.4
1,349,603 + +0.7
1,349,603 + -0.8
1,349,603 + -0.2
1,349,603 + +0.2
1,349,603 + -1.4
1,349,603 + +0.4
1,349,604 - -1.1
1,349,604 - +0.6
1,349,604 - -0.5
1,349,604 - +2.6
1,349,604 - +0.2
1,349,604 - -2.2
1,349,631 - -2.2
1,349,631 - +0.2
1,349,631 - +0.2

Or see this region's nucleotide sequence