Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1130

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1127 and Pf1N1B4_1128 are separated by 169 nucleotidesPf1N1B4_1128 and Pf1N1B4_1129 are separated by 351 nucleotidesPf1N1B4_1129 and Pf1N1B4_1130 overlap by 19 nucleotidesPf1N1B4_1130 and Pf1N1B4_1131 are separated by 502 nucleotides Pf1N1B4_1127 - Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2), at 1,265,723 to 1,266,703 _1127 Pf1N1B4_1128 - hypothetical protein, at 1,266,873 to 1,267,088 _1128 Pf1N1B4_1129 - Peptide chain release factor 3, at 1,267,440 to 1,267,691 _1129 Pf1N1B4_1130 - Peptide chain release factor 3, at 1,267,673 to 1,269,022 _1130 Pf1N1B4_1131 - L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1), at 1,269,525 to 1,270,241 _1131 Position (kb) 1267 1268 1269 1270Strain fitness (log2 ratio) -2 -1 0 1 2at 1266.701 kb on + strandat 1266.874 kb on + strandat 1266.874 kb on + strandat 1266.875 kb on - strandat 1266.875 kb on - strandat 1266.875 kb on - strandat 1267.055 kb on + strand, within Pf1N1B4_1128at 1267.055 kb on + strand, within Pf1N1B4_1128at 1267.055 kb on + strand, within Pf1N1B4_1128at 1267.056 kb on - strand, within Pf1N1B4_1128at 1267.056 kb on - strand, within Pf1N1B4_1128at 1267.078 kb on + strandat 1267.078 kb on + strandat 1267.078 kb on + strandat 1267.078 kb on + strandat 1267.079 kb on - strandat 1267.079 kb on - strandat 1267.079 kb on - strandat 1267.082 kb on + strandat 1267.082 kb on + strandat 1267.082 kb on + strandat 1267.082 kb on + strandat 1267.082 kb on + strandat 1267.082 kb on + strandat 1267.082 kb on + strandat 1267.083 kb on - strandat 1267.083 kb on - strandat 1267.083 kb on - strandat 1267.083 kb on - strandat 1267.088 kb on + strandat 1267.088 kb on + strandat 1267.088 kb on + strandat 1267.088 kb on + strandat 1267.088 kb on + strandat 1267.088 kb on + strandat 1267.089 kb on - strandat 1267.134 kb on + strandat 1267.148 kb on + strandat 1267.148 kb on + strandat 1267.149 kb on - strandat 1267.235 kb on + strandat 1267.235 kb on + strandat 1267.236 kb on - strandat 1267.237 kb on + strandat 1267.407 kb on - strandat 1267.407 kb on - strandat 1267.407 kb on - strandat 1267.428 kb on - strandat 1269.150 kb on + strandat 1269.150 kb on + strandat 1269.170 kb on + strandat 1269.170 kb on + strandat 1269.170 kb on + strandat 1269.170 kb on + strandat 1269.197 kb on + strandat 1269.258 kb on + strandat 1269.258 kb on + strandat 1269.258 kb on + strandat 1269.259 kb on - strandat 1269.284 kb on - strandat 1269.284 kb on - strandat 1269.287 kb on + strandat 1269.287 kb on + strandat 1269.287 kb on + strandat 1269.288 kb on - strandat 1269.288 kb on - strandat 1269.297 kb on + strandat 1269.297 kb on + strandat 1269.297 kb on + strandat 1269.297 kb on + strandat 1269.297 kb on + strandat 1269.297 kb on + strandat 1269.301 kb on + strandat 1269.301 kb on + strandat 1269.301 kb on + strandat 1269.301 kb on + strandat 1269.302 kb on - strandat 1269.313 kb on + strandat 1269.313 kb on + strandat 1269.313 kb on + strandat 1269.313 kb on + strandat 1269.314 kb on - strandat 1269.314 kb on - strandat 1269.352 kb on + strandat 1269.352 kb on + strandat 1269.353 kb on - strandat 1269.399 kb on - strandat 1269.422 kb on - strandat 1269.537 kb on + strandat 1269.553 kb on + strandat 1269.553 kb on + strandat 1269.554 kb on - strandat 1269.645 kb on + strand, within Pf1N1B4_1131at 1269.697 kb on + strand, within Pf1N1B4_1131at 1269.697 kb on + strand, within Pf1N1B4_1131at 1269.698 kb on - strand, within Pf1N1B4_1131at 1269.698 kb on - strand, within Pf1N1B4_1131at 1269.698 kb on - strand, within Pf1N1B4_1131at 1269.698 kb on - strand, within Pf1N1B4_1131at 1269.698 kb on - strand, within Pf1N1B4_1131at 1269.806 kb on - strand, within Pf1N1B4_1131at 1269.900 kb on + strand, within Pf1N1B4_1131at 1269.900 kb on + strand, within Pf1N1B4_1131at 1269.900 kb on + strand, within Pf1N1B4_1131at 1269.900 kb on + strand, within Pf1N1B4_1131at 1269.900 kb on + strand, within Pf1N1B4_1131at 1269.901 kb on - strand, within Pf1N1B4_1131at 1269.901 kb on - strand, within Pf1N1B4_1131at 1269.977 kb on - strand, within Pf1N1B4_1131

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,266,701 + -2.0
1,266,874 + -0.8
1,266,874 + -1.4
1,266,875 - -0.4
1,266,875 - +2.2
1,266,875 - +1.7
1,267,055 + Pf1N1B4_1128 0.84 +1.9
1,267,055 + Pf1N1B4_1128 0.84 -0.2
1,267,055 + Pf1N1B4_1128 0.84 +0.2
1,267,056 - Pf1N1B4_1128 0.85 -2.4
1,267,056 - Pf1N1B4_1128 0.85 +1.2
1,267,078 + -1.7
1,267,078 + +0.7
1,267,078 + +0.6
1,267,078 + -1.8
1,267,079 - +1.2
1,267,079 - -2.2
1,267,079 - +2.5
1,267,082 + +0.9
1,267,082 + +1.4
1,267,082 + -1.8
1,267,082 + -1.4
1,267,082 + -2.0
1,267,082 + +2.2
1,267,082 + +1.5
1,267,083 - +1.2
1,267,083 - +1.0
1,267,083 - -0.8
1,267,083 - -1.8
1,267,088 + +0.2
1,267,088 + -1.8
1,267,088 + -0.7
1,267,088 + +1.2
1,267,088 + -1.4
1,267,088 + -1.7
1,267,089 - -0.6
1,267,134 + +0.4
1,267,148 + +0.5
1,267,148 + -1.7
1,267,149 - -0.4
1,267,235 + +0.9
1,267,235 + +0.2
1,267,236 - +1.2
1,267,237 + -0.3
1,267,407 - +1.9
1,267,407 - -0.1
1,267,407 - -1.4
1,267,428 - -0.4
1,269,150 + +0.7
1,269,150 + +0.8
1,269,170 + -1.4
1,269,170 + +1.7
1,269,170 + +0.4
1,269,170 + +1.4
1,269,197 + +0.7
1,269,258 + +1.3
1,269,258 + +0.2
1,269,258 + +0.8
1,269,259 - -0.2
1,269,284 - -1.2
1,269,284 - +1.7
1,269,287 + +0.0
1,269,287 + +0.7
1,269,287 + +0.2
1,269,288 - +0.6
1,269,288 - +1.5
1,269,297 + +1.3
1,269,297 + -1.3
1,269,297 + -0.3
1,269,297 + -1.2
1,269,297 + +0.4
1,269,297 + +1.2
1,269,301 + -0.0
1,269,301 + +0.7
1,269,301 + +1.2
1,269,301 + +0.2
1,269,302 - -0.3
1,269,313 + +0.6
1,269,313 + -1.4
1,269,313 + -0.1
1,269,313 + +1.5
1,269,314 - -0.1
1,269,314 - +1.2
1,269,352 + -0.5
1,269,352 + -1.1
1,269,353 - -1.8
1,269,399 - -0.8
1,269,422 - -2.2
1,269,537 + -0.5
1,269,553 + +0.5
1,269,553 + +1.5
1,269,554 - +0.2
1,269,645 + Pf1N1B4_1131 0.17 -1.1
1,269,697 + Pf1N1B4_1131 0.24 +2.0
1,269,697 + Pf1N1B4_1131 0.24 +0.7
1,269,698 - Pf1N1B4_1131 0.24 +1.2
1,269,698 - Pf1N1B4_1131 0.24 +0.2
1,269,698 - Pf1N1B4_1131 0.24 +1.2
1,269,698 - Pf1N1B4_1131 0.24 +0.7
1,269,698 - Pf1N1B4_1131 0.24 -2.3
1,269,806 - Pf1N1B4_1131 0.39 +0.2
1,269,900 + Pf1N1B4_1131 0.52 +0.6
1,269,900 + Pf1N1B4_1131 0.52 -0.4
1,269,900 + Pf1N1B4_1131 0.52 -0.2
1,269,900 + Pf1N1B4_1131 0.52 +1.1
1,269,900 + Pf1N1B4_1131 0.52 +1.3
1,269,901 - Pf1N1B4_1131 0.52 +0.2
1,269,901 - Pf1N1B4_1131 0.52 +1.6
1,269,977 - Pf1N1B4_1131 0.63 -0.1

Or see this region's nucleotide sequence