Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1068

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1066 and Pf1N1B4_1067 are separated by 126 nucleotidesPf1N1B4_1067 and Pf1N1B4_1068 are separated by 128 nucleotidesPf1N1B4_1068 and Pf1N1B4_1069 are separated by 22 nucleotidesPf1N1B4_1069 and Pf1N1B4_1070 are separated by 115 nucleotidesPf1N1B4_1070 and Pf1N1B4_1071 overlap by 4 nucleotides Pf1N1B4_1066 - Histidinol dehydrogenase (EC 1.1.1.23), at 1,201,450 to 1,202,775 _1066 Pf1N1B4_1067 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 1,202,902 to 1,203,537 _1067 Pf1N1B4_1068 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 1,203,666 to 1,204,931 _1068 Pf1N1B4_1069 - YrbA protein, at 1,204,954 to 1,205,193 _1069 Pf1N1B4_1070 - Uncharacterized protein YrbB, at 1,205,309 to 1,205,614 _1070 Pf1N1B4_1071 - Uncharacterized ABC transporter, auxiliary component YrbC, at 1,205,611 to 1,206,264 _1071 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1202.790 kb on - strandat 1202.790 kb on - strandat 1202.790 kb on - strandat 1202.790 kb on - strandat 1202.821 kb on - strandat 1202.821 kb on - strandat 1202.821 kb on - strandat 1203.128 kb on + strand, within Pf1N1B4_1067at 1203.129 kb on - strand, within Pf1N1B4_1067at 1203.167 kb on + strandat 1203.171 kb on - strand, within Pf1N1B4_1067at 1203.290 kb on + strand, within Pf1N1B4_1067at 1203.290 kb on + strand, within Pf1N1B4_1067at 1203.290 kb on + strand, within Pf1N1B4_1067at 1203.291 kb on - strand, within Pf1N1B4_1067at 1203.291 kb on - strand, within Pf1N1B4_1067at 1203.291 kb on - strand, within Pf1N1B4_1067at 1203.291 kb on - strand, within Pf1N1B4_1067at 1203.291 kb on - strand, within Pf1N1B4_1067at 1203.291 kb on - strand, within Pf1N1B4_1067at 1203.309 kb on - strand, within Pf1N1B4_1067at 1203.365 kb on + strand, within Pf1N1B4_1067at 1203.365 kb on + strandat 1203.365 kb on + strand, within Pf1N1B4_1067at 1203.366 kb on - strand, within Pf1N1B4_1067at 1203.366 kb on - strand, within Pf1N1B4_1067at 1203.562 kb on + strandat 1203.594 kb on + strandat 1203.594 kb on + strandat 1203.594 kb on + strandat 1203.594 kb on + strandat 1203.595 kb on - strandat 1203.595 kb on - strandat 1203.595 kb on - strandat 1203.595 kb on - strandat 1203.595 kb on - strandat 1203.595 kb on - strandat 1203.667 kb on + strandat 1204.996 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.046 kb on - strand, within Pf1N1B4_1069at 1205.095 kb on - strand, within Pf1N1B4_1069at 1205.138 kb on - strand, within Pf1N1B4_1069at 1205.183 kb on - strandat 1205.238 kb on - strandat 1205.238 kb on - strandat 1205.238 kb on - strandat 1205.297 kb on + strandat 1205.299 kb on + strandat 1205.299 kb on + strandat 1205.299 kb on + strandat 1205.300 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
1,202,790 - -0.2
1,202,790 - +0.9
1,202,790 - +1.7
1,202,790 - -1.5
1,202,821 - +1.4
1,202,821 - +1.0
1,202,821 - -1.9
1,203,128 + Pf1N1B4_1067 0.36 -1.5
1,203,129 - Pf1N1B4_1067 0.36 +1.7
1,203,167 + +1.7
1,203,171 - Pf1N1B4_1067 0.42 -0.6
1,203,290 + Pf1N1B4_1067 0.61 +0.5
1,203,290 + Pf1N1B4_1067 0.61 -0.9
1,203,290 + Pf1N1B4_1067 0.61 -0.0
1,203,291 - Pf1N1B4_1067 0.61 -0.6
1,203,291 - Pf1N1B4_1067 0.61 +0.9
1,203,291 - Pf1N1B4_1067 0.61 +0.1
1,203,291 - Pf1N1B4_1067 0.61 +0.3
1,203,291 - Pf1N1B4_1067 0.61 -0.0
1,203,291 - Pf1N1B4_1067 0.61 -0.6
1,203,309 - Pf1N1B4_1067 0.64 -2.5
1,203,365 + Pf1N1B4_1067 0.73 +0.8
1,203,365 + +0.1
1,203,365 + Pf1N1B4_1067 0.73 -0.0
1,203,366 - Pf1N1B4_1067 0.73 +4.0
1,203,366 - Pf1N1B4_1067 0.73 -1.1
1,203,562 + -0.9
1,203,594 + -0.2
1,203,594 + -0.5
1,203,594 + +0.1
1,203,594 + +2.4
1,203,595 - -0.3
1,203,595 - +0.1
1,203,595 - -0.4
1,203,595 - -0.9
1,203,595 - -0.9
1,203,595 - +0.9
1,203,667 + -2.2
1,204,996 - Pf1N1B4_1069 0.17 -1.6
1,205,046 - Pf1N1B4_1069 0.38 -1.9
1,205,046 - Pf1N1B4_1069 0.38 -0.9
1,205,046 - Pf1N1B4_1069 0.38 -0.6
1,205,046 - Pf1N1B4_1069 0.38 +0.1
1,205,046 - Pf1N1B4_1069 0.38 -1.9
1,205,046 - Pf1N1B4_1069 0.38 -0.6
1,205,046 - Pf1N1B4_1069 0.38 +0.1
1,205,046 - Pf1N1B4_1069 0.38 -0.2
1,205,046 - Pf1N1B4_1069 0.38 -2.2
1,205,046 - Pf1N1B4_1069 0.38 +1.1
1,205,046 - Pf1N1B4_1069 0.38 -0.5
1,205,046 - Pf1N1B4_1069 0.38 +0.1
1,205,046 - Pf1N1B4_1069 0.38 -2.3
1,205,046 - Pf1N1B4_1069 0.38 -1.9
1,205,046 - Pf1N1B4_1069 0.38 -2.2
1,205,046 - Pf1N1B4_1069 0.38 +0.1
1,205,046 - Pf1N1B4_1069 0.38 -1.9
1,205,046 - Pf1N1B4_1069 0.38 -0.7
1,205,046 - Pf1N1B4_1069 0.38 -0.2
1,205,046 - Pf1N1B4_1069 0.38 -0.6
1,205,046 - Pf1N1B4_1069 0.38 -0.6
1,205,095 - Pf1N1B4_1069 0.59 -3.0
1,205,138 - Pf1N1B4_1069 0.77 +0.1
1,205,183 - +0.1
1,205,238 - -0.9
1,205,238 - +0.7
1,205,238 - -2.9
1,205,297 + -2.0
1,205,299 + -0.9
1,205,299 + +1.1
1,205,299 + +1.8
1,205,300 - +1.7

Or see this region's nucleotide sequence