Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1007 and Pf1N1B4_1008 are separated by 163 nucleotides Pf1N1B4_1008 and Pf1N1B4_1009 overlap by 4 nucleotides
Pf1N1B4_1007 - Transcriptional regulator, AraC family, at 1,141,858 to 1,142,733
_1007
Pf1N1B4_1008 - FIG006045: Sigma factor, ECF subfamily, at 1,142,897 to 1,143,391
_1008
Pf1N1B4_1009 - Iron siderophore sensor protein, at 1,143,388 to 1,144,326
_1009
Position (kb)
1142
1143
1144 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1141.990 kb on + strand, within Pf1N1B4_1007 at 1142.023 kb on + strand, within Pf1N1B4_1007 at 1142.023 kb on + strand, within Pf1N1B4_1007 at 1142.023 kb on + strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.024 kb on - strand, within Pf1N1B4_1007 at 1142.044 kb on - strand, within Pf1N1B4_1007 at 1142.158 kb on + strand, within Pf1N1B4_1007 at 1142.492 kb on + strand, within Pf1N1B4_1007 at 1142.493 kb on - strand, within Pf1N1B4_1007 at 1142.560 kb on + strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.561 kb on - strand, within Pf1N1B4_1007 at 1142.629 kb on - strand at 1142.933 kb on + strand at 1143.140 kb on + strand, within Pf1N1B4_1008 at 1143.141 kb on - strand, within Pf1N1B4_1008 at 1143.256 kb on - strand, within Pf1N1B4_1008 at 1143.300 kb on - strand, within Pf1N1B4_1008 at 1143.378 kb on - strand at 1143.641 kb on + strand, within Pf1N1B4_1009 at 1143.641 kb on + strand, within Pf1N1B4_1009 at 1143.641 kb on + strand, within Pf1N1B4_1009 at 1143.642 kb on - strand, within Pf1N1B4_1009 at 1143.642 kb on - strand, within Pf1N1B4_1009 at 1143.642 kb on - strand, within Pf1N1B4_1009 at 1143.721 kb on + strand, within Pf1N1B4_1009 at 1143.747 kb on + strand, within Pf1N1B4_1009 at 1143.747 kb on + strand, within Pf1N1B4_1009 at 1143.748 kb on - strand, within Pf1N1B4_1009 at 1143.748 kb on - strand, within Pf1N1B4_1009 at 1143.748 kb on - strand, within Pf1N1B4_1009 at 1143.842 kb on + strand, within Pf1N1B4_1009 at 1143.842 kb on + strand, within Pf1N1B4_1009 at 1143.843 kb on - strand, within Pf1N1B4_1009 at 1143.843 kb on - strand, within Pf1N1B4_1009 at 1143.843 kb on - strand, within Pf1N1B4_1009 at 1143.843 kb on - strand, within Pf1N1B4_1009 at 1143.884 kb on + strand, within Pf1N1B4_1009 at 1143.884 kb on + strand, within Pf1N1B4_1009 at 1143.885 kb on - strand, within Pf1N1B4_1009 at 1143.885 kb on - strand at 1143.885 kb on - strand, within Pf1N1B4_1009 at 1143.885 kb on - strand at 1144.176 kb on + strand, within Pf1N1B4_1009 at 1144.176 kb on + strand, within Pf1N1B4_1009 at 1144.176 kb on + strand, within Pf1N1B4_1009 at 1144.176 kb on + strand, within Pf1N1B4_1009 at 1144.176 kb on + strand, within Pf1N1B4_1009 at 1144.177 kb on - strand, within Pf1N1B4_1009 at 1144.177 kb on - strand, within Pf1N1B4_1009 at 1144.177 kb on - strand, within Pf1N1B4_1009 at 1144.177 kb on - strand, within Pf1N1B4_1009 at 1144.177 kb on - strand, within Pf1N1B4_1009 at 1144.219 kb on + strand, within Pf1N1B4_1009 at 1144.220 kb on - strand, within Pf1N1B4_1009 at 1144.290 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,141,990 + Pf1N1B4_1007 0.15 -2.2 1,142,023 + Pf1N1B4_1007 0.19 -0.9 1,142,023 + Pf1N1B4_1007 0.19 +0.9 1,142,023 + Pf1N1B4_1007 0.19 -0.6 1,142,024 - Pf1N1B4_1007 0.19 +0.1 1,142,024 - Pf1N1B4_1007 0.19 -1.5 1,142,024 - Pf1N1B4_1007 0.19 +0.7 1,142,024 - Pf1N1B4_1007 0.19 +0.1 1,142,024 - Pf1N1B4_1007 0.19 +0.1 1,142,024 - Pf1N1B4_1007 0.19 -0.9 1,142,024 - Pf1N1B4_1007 0.19 -0.7 1,142,044 - Pf1N1B4_1007 0.21 -1.7 1,142,158 + Pf1N1B4_1007 0.34 -1.3 1,142,492 + Pf1N1B4_1007 0.72 +1.1 1,142,493 - Pf1N1B4_1007 0.72 -0.1 1,142,560 + Pf1N1B4_1007 0.80 -1.2 1,142,561 - Pf1N1B4_1007 0.80 +0.7 1,142,561 - Pf1N1B4_1007 0.80 -0.9 1,142,561 - Pf1N1B4_1007 0.80 +1.0 1,142,561 - Pf1N1B4_1007 0.80 -2.2 1,142,561 - Pf1N1B4_1007 0.80 +0.8 1,142,561 - Pf1N1B4_1007 0.80 -0.3 1,142,561 - Pf1N1B4_1007 0.80 +0.1 1,142,561 - Pf1N1B4_1007 0.80 -2.2 1,142,629 - -0.9 1,142,933 + +0.6 1,143,140 + Pf1N1B4_1008 0.49 -0.9 1,143,141 - Pf1N1B4_1008 0.49 -0.5 1,143,256 - Pf1N1B4_1008 0.73 -2.2 1,143,300 - Pf1N1B4_1008 0.81 +0.1 1,143,378 - +0.7 1,143,641 + Pf1N1B4_1009 0.27 -0.6 1,143,641 + Pf1N1B4_1009 0.27 -0.4 1,143,641 + Pf1N1B4_1009 0.27 +0.5 1,143,642 - Pf1N1B4_1009 0.27 -0.3 1,143,642 - Pf1N1B4_1009 0.27 -0.0 1,143,642 - Pf1N1B4_1009 0.27 +2.1 1,143,721 + Pf1N1B4_1009 0.35 +2.4 1,143,747 + Pf1N1B4_1009 0.38 -0.1 1,143,747 + Pf1N1B4_1009 0.38 -1.9 1,143,748 - Pf1N1B4_1009 0.38 -1.5 1,143,748 - Pf1N1B4_1009 0.38 +1.1 1,143,748 - Pf1N1B4_1009 0.38 -0.6 1,143,842 + Pf1N1B4_1009 0.48 +0.1 1,143,842 + Pf1N1B4_1009 0.48 +0.7 1,143,843 - Pf1N1B4_1009 0.48 -0.9 1,143,843 - Pf1N1B4_1009 0.48 -1.3 1,143,843 - Pf1N1B4_1009 0.48 -0.3 1,143,843 - Pf1N1B4_1009 0.48 -0.1 1,143,884 + Pf1N1B4_1009 0.53 +0.9 1,143,884 + Pf1N1B4_1009 0.53 -0.2 1,143,885 - Pf1N1B4_1009 0.53 +1.1 1,143,885 - +1.1 1,143,885 - Pf1N1B4_1009 0.53 +0.5 1,143,885 - -0.9 1,144,176 + Pf1N1B4_1009 0.84 -0.3 1,144,176 + Pf1N1B4_1009 0.84 +1.1 1,144,176 + Pf1N1B4_1009 0.84 +1.7 1,144,176 + Pf1N1B4_1009 0.84 -2.2 1,144,176 + Pf1N1B4_1009 0.84 +1.6 1,144,177 - Pf1N1B4_1009 0.84 -2.5 1,144,177 - Pf1N1B4_1009 0.84 +0.1 1,144,177 - Pf1N1B4_1009 0.84 +0.3 1,144,177 - Pf1N1B4_1009 0.84 -0.2 1,144,177 - Pf1N1B4_1009 0.84 -0.9 1,144,219 + Pf1N1B4_1009 0.88 +1.1 1,144,220 - Pf1N1B4_1009 0.89 -0.6 1,144,290 + +0.1
Or see this region's nucleotide sequence