Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06895 and MMP_RS06900 are separated by 106 nucleotides MMP_RS06900 and MMP_RS06905 are separated by 129 nucleotides MMP_RS06905 and MMP_RS06910 are separated by 18 nucleotides MMP_RS06910 and MMP_RS06915 are separated by 102 nucleotides
MMP_RS06895: MMP_RS06895 - selenocysteine-specific translation elongation factor, at 1,316,720 to 1,318,126
_RS06895
MMP_RS06900: MMP_RS06900 - coenzyme F420-reducing hydrogenase FrhD protein, at 1,318,233 to 1,318,715
_RS06900
MMP_RS06905: MMP_RS06905 - hypothetical protein, at 1,318,845 to 1,319,039
_RS06905
MMP_RS06910: MMP_RS06910 - RlmF-related methyltransferase, at 1,319,058 to 1,319,852
_RS06910
MMP_RS06915: MMP_RS06915 - metallophosphoesterase, at 1,319,955 to 1,321,073
_RS06915
Position (kb) 1319
1320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1318.163 kb on - strand at 1318.173 kb on + strand at 1318.175 kb on + strand at 1318.176 kb on - strand at 1318.176 kb on - strand at 1318.176 kb on - strand at 1318.176 kb on - strand at 1318.177 kb on + strand at 1318.177 kb on + strand at 1318.177 kb on + strand at 1318.185 kb on + strand at 1318.188 kb on - strand at 1318.189 kb on + strand at 1318.189 kb on + strand at 1318.229 kb on + strand at 1318.286 kb on + strand, within MMP_RS06900 at 1318.557 kb on - strand, within MMP_RS06900 at 1318.561 kb on - strand, within MMP_RS06900 at 1318.562 kb on + strand, within MMP_RS06900 at 1318.592 kb on + strand, within MMP_RS06900 at 1318.753 kb on + strand at 1318.776 kb on - strand at 1318.777 kb on + strand at 1318.893 kb on + strand, within MMP_RS06905 at 1318.973 kb on - strand, within MMP_RS06905 at 1318.974 kb on + strand, within MMP_RS06905 at 1319.033 kb on + strand at 1319.037 kb on - strand at 1319.351 kb on + strand, within MMP_RS06910 at 1319.451 kb on + strand, within MMP_RS06910 at 1319.451 kb on + strand, within MMP_RS06910 at 1319.468 kb on - strand, within MMP_RS06910 at 1319.471 kb on - strand, within MMP_RS06910 at 1319.711 kb on - strand, within MMP_RS06910 at 1319.717 kb on + strand, within MMP_RS06910 at 1319.736 kb on + strand, within MMP_RS06910 at 1319.770 kb on - strand, within MMP_RS06910 at 1319.771 kb on + strand, within MMP_RS06910 at 1319.886 kb on - strand at 1319.886 kb on - strand at 1319.891 kb on - strand at 1319.892 kb on + strand at 1319.895 kb on + strand at 1319.895 kb on + strand at 1319.934 kb on + strand at 1320.050 kb on - strand at 1320.296 kb on - strand, within MMP_RS06915 at 1320.296 kb on - strand, within MMP_RS06915 at 1320.342 kb on - strand, within MMP_RS06915 at 1320.342 kb on - strand, within MMP_RS06915 at 1320.646 kb on + strand, within MMP_RS06915 at 1320.678 kb on + strand, within MMP_RS06915 at 1320.808 kb on - strand, within MMP_RS06915
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 1,318,163 - -1.3 1,318,173 + -3.4 1,318,175 + -4.3 1,318,176 - -0.4 1,318,176 - +0.8 1,318,176 - +0.8 1,318,176 - -0.3 1,318,177 + +0.1 1,318,177 + +0.3 1,318,177 + -0.2 1,318,185 + -2.4 1,318,188 - +0.1 1,318,189 + -2.4 1,318,189 + -1.7 1,318,229 + +2.0 1,318,286 + MMP_RS06900 0.11 +0.1 1,318,557 - MMP_RS06900 0.67 +2.9 1,318,561 - MMP_RS06900 0.68 +1.1 1,318,562 + MMP_RS06900 0.68 +0.6 1,318,592 + MMP_RS06900 0.74 +0.2 1,318,753 + +0.3 1,318,776 - +0.9 1,318,777 + +0.5 1,318,893 + MMP_RS06905 0.25 +4.0 1,318,973 - MMP_RS06905 0.66 +0.3 1,318,974 + MMP_RS06905 0.66 +0.6 1,319,033 + +0.1 1,319,037 - +0.3 1,319,351 + MMP_RS06910 0.37 +0.2 1,319,451 + MMP_RS06910 0.49 +0.1 1,319,451 + MMP_RS06910 0.49 +0.7 1,319,468 - MMP_RS06910 0.52 +0.4 1,319,471 - MMP_RS06910 0.52 +0.3 1,319,711 - MMP_RS06910 0.82 +0.7 1,319,717 + MMP_RS06910 0.83 +0.2 1,319,736 + MMP_RS06910 0.85 +0.6 1,319,770 - MMP_RS06910 0.90 +0.7 1,319,771 + MMP_RS06910 0.90 +0.2 1,319,886 - +0.0 1,319,886 - +0.6 1,319,891 - +0.0 1,319,892 + +3.4 1,319,895 + +0.1 1,319,895 + +0.6 1,319,934 + -0.4 1,320,050 - -0.3 1,320,296 - MMP_RS06915 0.30 +0.2 1,320,296 - MMP_RS06915 0.30 +0.3 1,320,342 - MMP_RS06915 0.35 -0.0 1,320,342 - MMP_RS06915 0.35 -0.1 1,320,646 + MMP_RS06915 0.62 -0.2 1,320,678 + MMP_RS06915 0.65 -0.2 1,320,808 - MMP_RS06915 0.76 +0.4
Or see this region's nucleotide sequence