Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06745

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06735 and MMP_RS06740 are separated by 51 nucleotidesMMP_RS06740 and MMP_RS06745 are separated by 75 nucleotidesMMP_RS06745 and MMP_RS06750 are separated by 35 nucleotidesMMP_RS06750 and MMP_RS06755 are separated by 29 nucleotidesMMP_RS06755 and MMP_RS06760 are separated by 17 nucleotides MMP_RS06735: MMP_RS06735 - class I SAM-dependent rRNA methyltransferase, at 1,293,490 to 1,294,632 _RS06735 MMP_RS06740: MMP_RS06740 - fructose-6-phosphate aldolase, at 1,294,684 to 1,295,331 _RS06740 MMP_RS06745: MMP_RS06745 - DUF2119 domain-containing protein, at 1,295,407 to 1,296,018 _RS06745 MMP_RS06750: MMP_RS06750 - IMP cyclohydrolase, at 1,296,054 to 1,296,659 _RS06750 MMP_RS06755: MMP_RS06755 - 4Fe-4S binding protein, at 1,296,689 to 1,296,847 _RS06755 MMP_RS06760: MMP_RS06760 - hypothetical protein, at 1,296,865 to 1,297,491 _RS06760 Position (kb) 1295 1296 1297Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1294.508 kb on - strand, within MMP_RS06735at 1294.509 kb on + strand, within MMP_RS06735at 1294.552 kb on + strandat 1294.604 kb on - strandat 1294.685 kb on - strandat 1295.089 kb on - strandat 1295.171 kb on + strandat 1295.240 kb on + strandat 1295.370 kb on + strandat 1295.385 kb on - strandat 1295.389 kb on - strandat 1295.390 kb on + strandat 1295.395 kb on + strandat 1295.395 kb on + strandat 1295.468 kb on - strandat 1295.472 kb on - strand, within MMP_RS06745at 1295.539 kb on - strand, within MMP_RS06745at 1295.659 kb on - strand, within MMP_RS06745at 1295.660 kb on + strand, within MMP_RS06745at 1295.940 kb on + strand, within MMP_RS06745at 1296.147 kb on - strandat 1296.489 kb on + strandat 1296.655 kb on - strandat 1296.656 kb on + strandat 1296.729 kb on + strandat 1296.824 kb on - strandat 1296.861 kb on - strandat 1296.862 kb on + strandat 1296.919 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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1,294,508 - MMP_RS06735 0.89 +0.1
1,294,509 + MMP_RS06735 0.89 -0.1
1,294,552 + -0.4
1,294,604 - +0.3
1,294,685 - -0.1
1,295,089 - -3.8
1,295,171 + -3.1
1,295,240 + -3.5
1,295,370 + -3.3
1,295,385 - -0.1
1,295,389 - +0.4
1,295,390 + +0.6
1,295,395 + -0.0
1,295,395 + +0.0
1,295,468 - +0.3
1,295,472 - MMP_RS06745 0.11 -0.0
1,295,539 - MMP_RS06745 0.22 +0.4
1,295,659 - MMP_RS06745 0.41 +0.6
1,295,660 + MMP_RS06745 0.41 +1.0
1,295,940 + MMP_RS06745 0.87 +0.1
1,296,147 - -3.3
1,296,489 + -2.8
1,296,655 - -4.3
1,296,656 + -1.7
1,296,729 + -4.9
1,296,824 - -4.8
1,296,861 - -3.2
1,296,862 + -1.4
1,296,919 + -0.3

Or see this region's nucleotide sequence