Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05080

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05075 and MMP_RS05080 are separated by 13 nucleotidesMMP_RS05080 and MMP_RS05085 are separated by 14 nucleotidesMMP_RS05085 and MMP_RS05090 are separated by 10 nucleotides MMP_RS05075: MMP_RS05075 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 964,809 to 966,182 _RS05075 MMP_RS05080: MMP_RS05080 - acetyl-CoA decarbonylase/synthase complex subunit delta, at 966,196 to 967,350 _RS05080 MMP_RS05085: MMP_RS05085 - AAA family ATPase, at 967,365 to 968,117 _RS05085 MMP_RS05090: MMP_RS05090 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta, at 968,128 to 969,501 _RS05090 Position (kb) 966 967 968Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 965.209 kb on - strand, within MMP_RS05075at 965.252 kb on - strand, within MMP_RS05075at 965.256 kb on - strand, within MMP_RS05075at 965.265 kb on - strand, within MMP_RS05075at 965.439 kb on + strand, within MMP_RS05075at 965.477 kb on + strand, within MMP_RS05075at 965.496 kb on - strand, within MMP_RS05075at 965.496 kb on - strand, within MMP_RS05075at 965.497 kb on + strand, within MMP_RS05075at 965.497 kb on + strand, within MMP_RS05075at 965.598 kb on - strand, within MMP_RS05075at 965.621 kb on - strand, within MMP_RS05075at 965.639 kb on + strand, within MMP_RS05075at 965.790 kb on - strand, within MMP_RS05075at 965.791 kb on + strand, within MMP_RS05075at 965.890 kb on + strand, within MMP_RS05075at 965.890 kb on + strand, within MMP_RS05075at 965.890 kb on + strand, within MMP_RS05075at 965.917 kb on - strand, within MMP_RS05075at 965.918 kb on + strand, within MMP_RS05075at 965.918 kb on + strand, within MMP_RS05075at 965.921 kb on + strand, within MMP_RS05075at 965.936 kb on - strand, within MMP_RS05075at 965.936 kb on - strand, within MMP_RS05075at 965.937 kb on + strand, within MMP_RS05075at 965.938 kb on - strand, within MMP_RS05075at 965.939 kb on + strand, within MMP_RS05075at 965.939 kb on + strand, within MMP_RS05075at 965.940 kb on - strand, within MMP_RS05075at 965.941 kb on + strand, within MMP_RS05075at 965.941 kb on + strand, within MMP_RS05075at 965.941 kb on + strand, within MMP_RS05075at 966.017 kb on - strand, within MMP_RS05075at 966.047 kb on - strandat 966.108 kb on + strandat 966.161 kb on - strandat 966.161 kb on - strandat 966.209 kb on + strandat 966.222 kb on - strandat 966.223 kb on + strandat 966.252 kb on + strandat 966.313 kb on - strand, within MMP_RS05080at 966.313 kb on - strand, within MMP_RS05080at 966.505 kb on - strand, within MMP_RS05080at 966.559 kb on - strand, within MMP_RS05080at 966.559 kb on - strand, within MMP_RS05080at 966.560 kb on + strand, within MMP_RS05080at 966.578 kb on + strand, within MMP_RS05080at 966.591 kb on - strand, within MMP_RS05080at 966.622 kb on - strand, within MMP_RS05080at 966.623 kb on + strand, within MMP_RS05080at 966.623 kb on + strand, within MMP_RS05080at 966.864 kb on - strand, within MMP_RS05080at 966.910 kb on + strand, within MMP_RS05080at 966.964 kb on - strand, within MMP_RS05080at 966.964 kb on - strand, within MMP_RS05080at 966.965 kb on + strand, within MMP_RS05080at 966.965 kb on + strand, within MMP_RS05080at 967.021 kb on - strand, within MMP_RS05080at 967.022 kb on + strand, within MMP_RS05080at 967.467 kb on + strand, within MMP_RS05085at 967.483 kb on + strand, within MMP_RS05085at 967.570 kb on - strand, within MMP_RS05085at 967.732 kb on + strand, within MMP_RS05085at 967.741 kb on - strand, within MMP_RS05085at 967.742 kb on + strand, within MMP_RS05085at 967.781 kb on - strand, within MMP_RS05085at 967.795 kb on - strand, within MMP_RS05085at 967.853 kb on - strand, within MMP_RS05085at 967.871 kb on - strand, within MMP_RS05085at 967.892 kb on - strand, within MMP_RS05085at 967.910 kb on - strand, within MMP_RS05085at 967.911 kb on + strand, within MMP_RS05085at 968.129 kb on - strandat 968.130 kb on + strandat 968.297 kb on + strand, within MMP_RS05090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
remove
965,209 - MMP_RS05075 0.29 -2.7
965,252 - MMP_RS05075 0.32 -3.3
965,256 - MMP_RS05075 0.33 -2.2
965,265 - MMP_RS05075 0.33 -3.8
965,439 + MMP_RS05075 0.46 -3.2
965,477 + MMP_RS05075 0.49 -2.3
965,496 - MMP_RS05075 0.50 -2.9
965,496 - MMP_RS05075 0.50 -3.1
965,497 + MMP_RS05075 0.50 -5.0
965,497 + MMP_RS05075 0.50 -3.4
965,598 - MMP_RS05075 0.57 -3.4
965,621 - MMP_RS05075 0.59 -2.3
965,639 + MMP_RS05075 0.60 -3.7
965,790 - MMP_RS05075 0.71 -3.1
965,791 + MMP_RS05075 0.71 -2.9
965,890 + MMP_RS05075 0.79 -1.9
965,890 + MMP_RS05075 0.79 -3.5
965,890 + MMP_RS05075 0.79 -3.6
965,917 - MMP_RS05075 0.81 -2.7
965,918 + MMP_RS05075 0.81 -3.4
965,918 + MMP_RS05075 0.81 -5.2
965,921 + MMP_RS05075 0.81 -3.4
965,936 - MMP_RS05075 0.82 -3.9
965,936 - MMP_RS05075 0.82 -4.0
965,937 + MMP_RS05075 0.82 -4.6
965,938 - MMP_RS05075 0.82 -4.2
965,939 + MMP_RS05075 0.82 -5.4
965,939 + MMP_RS05075 0.82 -4.3
965,940 - MMP_RS05075 0.82 -4.5
965,941 + MMP_RS05075 0.82 -3.6
965,941 + MMP_RS05075 0.82 -3.3
965,941 + MMP_RS05075 0.82 -3.4
966,017 - MMP_RS05075 0.88 -3.1
966,047 - -3.7
966,108 + -4.3
966,161 - -2.9
966,161 - -4.1
966,209 + -4.8
966,222 - -2.8
966,223 + -4.2
966,252 + -3.9
966,313 - MMP_RS05080 0.10 -2.9
966,313 - MMP_RS05080 0.10 -2.9
966,505 - MMP_RS05080 0.27 -4.2
966,559 - MMP_RS05080 0.31 -3.6
966,559 - MMP_RS05080 0.31 -3.6
966,560 + MMP_RS05080 0.32 -3.6
966,578 + MMP_RS05080 0.33 -3.7
966,591 - MMP_RS05080 0.34 -3.6
966,622 - MMP_RS05080 0.37 -3.7
966,623 + MMP_RS05080 0.37 -3.9
966,623 + MMP_RS05080 0.37 -4.0
966,864 - MMP_RS05080 0.58 -3.0
966,910 + MMP_RS05080 0.62 -3.4
966,964 - MMP_RS05080 0.66 -3.4
966,964 - MMP_RS05080 0.66 -4.1
966,965 + MMP_RS05080 0.67 -3.7
966,965 + MMP_RS05080 0.67 -2.5
967,021 - MMP_RS05080 0.71 -2.8
967,022 + MMP_RS05080 0.72 -2.5
967,467 + MMP_RS05085 0.14 -4.5
967,483 + MMP_RS05085 0.16 -3.5
967,570 - MMP_RS05085 0.27 -2.5
967,732 + MMP_RS05085 0.49 -3.5
967,741 - MMP_RS05085 0.50 -3.2
967,742 + MMP_RS05085 0.50 -3.5
967,781 - MMP_RS05085 0.55 -3.0
967,795 - MMP_RS05085 0.57 -4.1
967,853 - MMP_RS05085 0.65 -3.1
967,871 - MMP_RS05085 0.67 -3.5
967,892 - MMP_RS05085 0.70 -3.3
967,910 - MMP_RS05085 0.72 -2.8
967,911 + MMP_RS05085 0.73 -3.7
968,129 - -5.4
968,130 + -3.1
968,297 + MMP_RS05090 0.12 -4.5

Or see this region's nucleotide sequence