Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04505 and MMP_RS04510 are separated by 15 nucleotides MMP_RS04510 and MMP_RS04515 are separated by 13 nucleotides
MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683
_RS04505
MMP_RS04510: MMP_RS04510 - ABC transporter permease subunit, at 858,699 to 859,532
_RS04510
MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715
_RS04515
Position (kb) 858
859
860 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 857.709 kb on - strand at 857.712 kb on + strand at 857.712 kb on + strand at 857.798 kb on + strand at 857.823 kb on - strand at 857.890 kb on - strand, within MMP_RS04505 at 857.890 kb on - strand, within MMP_RS04505 at 857.897 kb on + strand, within MMP_RS04505 at 857.951 kb on + strand, within MMP_RS04505 at 857.953 kb on + strand, within MMP_RS04505 at 857.996 kb on + strand, within MMP_RS04505 at 857.997 kb on - strand, within MMP_RS04505 at 857.997 kb on - strand, within MMP_RS04505 at 857.997 kb on - strand, within MMP_RS04505 at 858.018 kb on - strand, within MMP_RS04505 at 858.019 kb on + strand, within MMP_RS04505 at 858.090 kb on - strand, within MMP_RS04505 at 858.091 kb on + strand, within MMP_RS04505 at 858.091 kb on + strand, within MMP_RS04505 at 858.147 kb on + strand, within MMP_RS04505 at 858.213 kb on + strand, within MMP_RS04505 at 858.291 kb on - strand, within MMP_RS04505 at 858.304 kb on - strand, within MMP_RS04505 at 858.304 kb on - strand, within MMP_RS04505 at 858.304 kb on - strand, within MMP_RS04505 at 858.304 kb on - strand, within MMP_RS04505 at 858.304 kb on - strand, within MMP_RS04505 at 858.304 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.308 kb on - strand, within MMP_RS04505 at 858.309 kb on + strand, within MMP_RS04505 at 858.309 kb on + strand, within MMP_RS04505 at 858.309 kb on + strand, within MMP_RS04505 at 858.309 kb on + strand, within MMP_RS04505 at 858.310 kb on - strand, within MMP_RS04505 at 858.311 kb on + strand, within MMP_RS04505 at 858.314 kb on - strand, within MMP_RS04505 at 858.351 kb on - strand, within MMP_RS04505 at 858.351 kb on - strand, within MMP_RS04505 at 858.352 kb on + strand, within MMP_RS04505 at 858.352 kb on + strand, within MMP_RS04505 at 858.429 kb on - strand, within MMP_RS04505 at 858.464 kb on - strand, within MMP_RS04505 at 858.464 kb on - strand, within MMP_RS04505 at 858.540 kb on + strand, within MMP_RS04505 at 858.546 kb on + strand, within MMP_RS04505 at 858.546 kb on + strand, within MMP_RS04505 at 858.697 kb on - strand at 858.759 kb on + strand at 858.794 kb on - strand, within MMP_RS04510 at 858.795 kb on + strand, within MMP_RS04510 at 858.816 kb on - strand, within MMP_RS04510 at 858.946 kb on + strand, within MMP_RS04510 at 859.115 kb on + strand, within MMP_RS04510 at 859.115 kb on + strand, within MMP_RS04510 at 859.141 kb on + strand, within MMP_RS04510 at 859.170 kb on - strand, within MMP_RS04510 at 859.171 kb on + strand, within MMP_RS04510 at 859.191 kb on - strand, within MMP_RS04510 at 859.292 kb on - strand, within MMP_RS04510 at 859.295 kb on - strand, within MMP_RS04510 at 859.353 kb on - strand, within MMP_RS04510 at 859.354 kb on + strand, within MMP_RS04510 at 859.386 kb on - strand, within MMP_RS04510 at 859.431 kb on - strand, within MMP_RS04510 at 859.431 kb on - strand, within MMP_RS04510 at 859.431 kb on - strand, within MMP_RS04510 at 859.432 kb on + strand, within MMP_RS04510 at 859.435 kb on - strand, within MMP_RS04510 at 859.436 kb on + strand, within MMP_RS04510 at 859.467 kb on + strand at 859.467 kb on + strand at 859.517 kb on - strand at 859.548 kb on + strand at 859.548 kb on + strand at 859.557 kb on - strand at 859.563 kb on - strand at 859.587 kb on + strand at 859.613 kb on + strand at 859.673 kb on + strand, within MMP_RS04515 at 859.689 kb on - strand, within MMP_RS04515 at 859.690 kb on + strand, within MMP_RS04515 at 859.690 kb on + strand, within MMP_RS04515 at 859.758 kb on + strand, within MMP_RS04515 at 859.777 kb on - strand, within MMP_RS04515 at 859.777 kb on - strand, within MMP_RS04515 at 859.778 kb on + strand, within MMP_RS04515 at 859.781 kb on - strand, within MMP_RS04515 at 859.782 kb on + strand, within MMP_RS04515 at 859.799 kb on + strand, within MMP_RS04515 at 859.839 kb on - strand, within MMP_RS04515 at 859.839 kb on - strand, within MMP_RS04515 at 859.842 kb on - strand, within MMP_RS04515 at 859.843 kb on + strand, within MMP_RS04515 at 860.047 kb on - strand, within MMP_RS04515 at 860.153 kb on + strand, within MMP_RS04515 at 860.167 kb on - strand, within MMP_RS04515 at 860.391 kb on + strand, within MMP_RS04515 at 860.401 kb on + strand, within MMP_RS04515 at 860.491 kb on + strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.493 kb on - strand, within MMP_RS04515 at 860.494 kb on + strand, within MMP_RS04515 at 860.501 kb on + strand, within MMP_RS04515
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 857,709 - +0.7 857,712 + +0.0 857,712 + +0.3 857,798 + +0.3 857,823 - -0.2 857,890 - MMP_RS04505 0.11 +0.5 857,890 - MMP_RS04505 0.11 +0.1 857,897 + MMP_RS04505 0.11 -0.1 857,951 + MMP_RS04505 0.17 +0.5 857,953 + MMP_RS04505 0.18 +0.6 857,996 + MMP_RS04505 0.23 -0.1 857,997 - MMP_RS04505 0.23 +0.3 857,997 - MMP_RS04505 0.23 -0.4 857,997 - MMP_RS04505 0.23 +0.2 858,018 - MMP_RS04505 0.25 +0.3 858,019 + MMP_RS04505 0.25 -0.9 858,090 - MMP_RS04505 0.33 +0.1 858,091 + MMP_RS04505 0.33 +0.4 858,091 + MMP_RS04505 0.33 +0.3 858,147 + MMP_RS04505 0.40 +0.2 858,213 + MMP_RS04505 0.47 +0.4 858,291 - MMP_RS04505 0.56 +0.6 858,304 - MMP_RS04505 0.57 +3.9 858,304 - MMP_RS04505 0.57 +0.2 858,304 - MMP_RS04505 0.57 +0.5 858,304 - MMP_RS04505 0.57 +0.6 858,304 - MMP_RS04505 0.57 +0.5 858,304 - MMP_RS04505 0.57 -0.1 858,308 - MMP_RS04505 0.58 -0.3 858,308 - MMP_RS04505 0.58 +0.2 858,308 - MMP_RS04505 0.58 +0.3 858,308 - MMP_RS04505 0.58 +3.4 858,308 - MMP_RS04505 0.58 -0.3 858,308 - MMP_RS04505 0.58 -0.2 858,308 - MMP_RS04505 0.58 +0.2 858,309 + MMP_RS04505 0.58 +0.5 858,309 + MMP_RS04505 0.58 +0.5 858,309 + MMP_RS04505 0.58 +0.1 858,309 + MMP_RS04505 0.58 +0.3 858,310 - MMP_RS04505 0.58 +0.5 858,311 + MMP_RS04505 0.58 +0.6 858,314 - MMP_RS04505 0.58 -0.4 858,351 - MMP_RS04505 0.62 +0.2 858,351 - MMP_RS04505 0.62 +0.3 858,352 + MMP_RS04505 0.63 +0.1 858,352 + MMP_RS04505 0.63 +0.4 858,429 - MMP_RS04505 0.71 +0.3 858,464 - MMP_RS04505 0.75 +0.2 858,464 - MMP_RS04505 0.75 -0.0 858,540 + MMP_RS04505 0.84 +0.2 858,546 + MMP_RS04505 0.84 +0.4 858,546 + MMP_RS04505 0.84 -0.3 858,697 - +0.6 858,759 + +0.4 858,794 - MMP_RS04510 0.11 +1.0 858,795 + MMP_RS04510 0.12 +3.6 858,816 - MMP_RS04510 0.14 -0.4 858,946 + MMP_RS04510 0.30 -0.1 859,115 + MMP_RS04510 0.50 +0.1 859,115 + MMP_RS04510 0.50 +0.1 859,141 + MMP_RS04510 0.53 +0.2 859,170 - MMP_RS04510 0.56 -0.2 859,171 + MMP_RS04510 0.57 +0.7 859,191 - MMP_RS04510 0.59 +0.2 859,292 - MMP_RS04510 0.71 +0.4 859,295 - MMP_RS04510 0.71 -0.1 859,353 - MMP_RS04510 0.78 +0.1 859,354 + MMP_RS04510 0.79 +0.4 859,386 - MMP_RS04510 0.82 +0.6 859,431 - MMP_RS04510 0.88 +0.3 859,431 - MMP_RS04510 0.88 +0.1 859,431 - MMP_RS04510 0.88 +0.0 859,432 + MMP_RS04510 0.88 +0.0 859,435 - MMP_RS04510 0.88 +0.7 859,436 + MMP_RS04510 0.88 -0.1 859,467 + +0.1 859,467 + +0.0 859,517 - +0.0 859,548 + +0.1 859,548 + +0.9 859,557 - +0.6 859,563 - +0.5 859,587 + +0.9 859,613 + -0.2 859,673 + MMP_RS04515 0.11 -0.4 859,689 - MMP_RS04515 0.12 +0.2 859,690 + MMP_RS04515 0.12 -0.0 859,690 + MMP_RS04515 0.12 -0.4 859,758 + MMP_RS04515 0.18 +0.2 859,777 - MMP_RS04515 0.20 +0.3 859,777 - MMP_RS04515 0.20 -0.1 859,778 + MMP_RS04515 0.20 +0.0 859,781 - MMP_RS04515 0.20 +1.2 859,782 + MMP_RS04515 0.20 +1.1 859,799 + MMP_RS04515 0.22 +0.4 859,839 - MMP_RS04515 0.25 +0.4 859,839 - MMP_RS04515 0.25 +0.3 859,842 - MMP_RS04515 0.25 +0.1 859,843 + MMP_RS04515 0.25 +0.5 860,047 - MMP_RS04515 0.43 +1.0 860,153 + MMP_RS04515 0.52 +0.4 860,167 - MMP_RS04515 0.53 +0.0 860,391 + MMP_RS04515 0.72 +0.8 860,401 + MMP_RS04515 0.73 +0.2 860,491 + MMP_RS04515 0.81 +0.6 860,493 - MMP_RS04515 0.81 +0.6 860,493 - MMP_RS04515 0.81 +0.1 860,493 - MMP_RS04515 0.81 +0.3 860,493 - MMP_RS04515 0.81 +0.1 860,493 - MMP_RS04515 0.81 -0.0 860,494 + MMP_RS04515 0.81 -0.0 860,501 + MMP_RS04515 0.82 +0.1
Or see this region's nucleotide sequence