Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04485 and MMP_RS04490 are separated by 149 nucleotides MMP_RS04490 and MMP_RS04495 are separated by 8 nucleotides MMP_RS04495 and MMP_RS04500 are separated by 57 nucleotides
MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363
_RS04485
MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989
_RS04490
MMP_RS04495: MMP_RS04495 - cation:proton antiporter, at 854,998 to 856,164
_RS04495
MMP_RS04500: MMP_RS04500 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 856,222 to 857,625
_RS04500
Position (kb) 854
855
856
857 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 854.007 kb on + strand, within MMP_RS04485 at 854.007 kb on + strand, within MMP_RS04485 at 854.008 kb on - strand, within MMP_RS04485 at 854.009 kb on + strand, within MMP_RS04485 at 854.011 kb on - strand, within MMP_RS04485 at 854.032 kb on - strand, within MMP_RS04485 at 854.097 kb on + strand, within MMP_RS04485 at 854.097 kb on + strand, within MMP_RS04485 at 854.167 kb on + strand, within MMP_RS04485 at 854.175 kb on - strand, within MMP_RS04485 at 854.177 kb on - strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.279 kb on - strand, within MMP_RS04485 at 854.303 kb on - strand at 854.306 kb on - strand at 854.306 kb on - strand at 854.346 kb on - strand at 854.425 kb on + strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.430 kb on - strand at 854.431 kb on + strand at 854.431 kb on + strand at 854.481 kb on - strand at 854.486 kb on - strand at 854.492 kb on + strand at 854.492 kb on + strand at 854.619 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.638 kb on - strand, within MMP_RS04490 at 854.639 kb on + strand, within MMP_RS04490 at 854.665 kb on + strand, within MMP_RS04490 at 854.698 kb on + strand, within MMP_RS04490 at 854.706 kb on + strand, within MMP_RS04490 at 854.756 kb on + strand, within MMP_RS04490 at 854.768 kb on + strand, within MMP_RS04490 at 854.837 kb on + strand, within MMP_RS04490 at 854.841 kb on - strand, within MMP_RS04490 at 854.849 kb on + strand, within MMP_RS04490 at 854.862 kb on - strand, within MMP_RS04490 at 854.862 kb on - strand, within MMP_RS04490 at 854.888 kb on - strand, within MMP_RS04490 at 854.926 kb on - strand, within MMP_RS04490 at 854.926 kb on - strand, within MMP_RS04490 at 854.927 kb on + strand, within MMP_RS04490 at 854.931 kb on - strand, within MMP_RS04490 at 854.965 kb on - strand at 854.965 kb on - strand at 854.966 kb on + strand at 855.040 kb on + strand at 855.041 kb on - strand at 855.066 kb on + strand at 855.230 kb on - strand, within MMP_RS04495 at 855.262 kb on + strand, within MMP_RS04495 at 855.540 kb on + strand, within MMP_RS04495 at 855.548 kb on - strand, within MMP_RS04495 at 855.586 kb on - strand, within MMP_RS04495 at 855.825 kb on + strand, within MMP_RS04495 at 855.835 kb on - strand, within MMP_RS04495 at 855.857 kb on - strand, within MMP_RS04495 at 855.857 kb on - strand, within MMP_RS04495 at 855.887 kb on - strand, within MMP_RS04495 at 855.888 kb on + strand, within MMP_RS04495 at 855.888 kb on + strand, within MMP_RS04495 at 855.888 kb on + strand, within MMP_RS04495 at 855.911 kb on - strand, within MMP_RS04495 at 856.023 kb on + strand, within MMP_RS04495 at 856.114 kb on + strand at 856.128 kb on - strand at 856.128 kb on - strand at 856.129 kb on + strand at 856.130 kb on - strand at 856.131 kb on + strand at 856.166 kb on + strand at 856.167 kb on - strand at 856.167 kb on - strand at 856.167 kb on - strand at 856.168 kb on + strand at 856.168 kb on + strand at 856.168 kb on + strand at 856.168 kb on + strand at 856.170 kb on - strand at 856.170 kb on - strand at 856.171 kb on + strand at 856.171 kb on + strand at 856.173 kb on + strand at 856.173 kb on + strand at 856.241 kb on + strand at 856.350 kb on + strand at 856.397 kb on - strand, within MMP_RS04500 at 856.401 kb on - strand, within MMP_RS04500 at 856.402 kb on + strand, within MMP_RS04500 at 856.457 kb on - strand, within MMP_RS04500 at 856.540 kb on - strand, within MMP_RS04500 at 856.600 kb on - strand, within MMP_RS04500 at 856.600 kb on - strand, within MMP_RS04500 at 856.677 kb on + strand, within MMP_RS04500 at 856.678 kb on - strand, within MMP_RS04500 at 856.726 kb on + strand, within MMP_RS04500 at 856.745 kb on + strand, within MMP_RS04500 at 856.763 kb on + strand, within MMP_RS04500 at 856.763 kb on + strand, within MMP_RS04500 at 856.771 kb on - strand, within MMP_RS04500 at 856.840 kb on - strand, within MMP_RS04500 at 856.841 kb on + strand, within MMP_RS04500 at 856.842 kb on - strand, within MMP_RS04500 at 856.843 kb on + strand, within MMP_RS04500 at 856.843 kb on + strand, within MMP_RS04500 at 856.843 kb on + strand, within MMP_RS04500 at 856.843 kb on + strand, within MMP_RS04500 at 856.843 kb on + strand, within MMP_RS04500 at 856.845 kb on - strand, within MMP_RS04500 at 856.845 kb on - strand, within MMP_RS04500 at 856.905 kb on - strand, within MMP_RS04500 at 856.906 kb on + strand, within MMP_RS04500 at 856.933 kb on - strand, within MMP_RS04500 at 856.933 kb on - strand, within MMP_RS04500 at 856.949 kb on + strand, within MMP_RS04500 at 856.963 kb on + strand, within MMP_RS04500 at 857.048 kb on - strand, within MMP_RS04500 at 857.066 kb on - strand, within MMP_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 854,007 + MMP_RS04485 0.57 -0.6 854,007 + MMP_RS04485 0.57 -0.3 854,008 - MMP_RS04485 0.57 +0.2 854,009 + MMP_RS04485 0.57 -0.3 854,011 - MMP_RS04485 0.57 +0.4 854,032 - MMP_RS04485 0.60 -0.6 854,097 + MMP_RS04485 0.68 +0.3 854,097 + MMP_RS04485 0.68 -0.1 854,167 + MMP_RS04485 0.76 +4.6 854,175 - MMP_RS04485 0.77 +0.3 854,177 - MMP_RS04485 0.77 +3.2 854,178 + MMP_RS04485 0.77 -0.3 854,178 + MMP_RS04485 0.77 -0.6 854,178 + MMP_RS04485 0.77 -0.8 854,178 + MMP_RS04485 0.77 -1.2 854,178 + MMP_RS04485 0.77 -0.2 854,279 - MMP_RS04485 0.90 -1.3 854,303 - -0.5 854,306 - -0.6 854,306 - -0.5 854,346 - -0.5 854,425 + +0.2 854,428 - -0.5 854,428 - -0.0 854,428 - -0.3 854,428 - +0.5 854,429 + +0.0 854,429 + +0.1 854,429 + +0.1 854,429 + +0.3 854,429 + -0.0 854,429 + -0.2 854,430 - +0.0 854,431 + -0.0 854,431 + +3.4 854,481 - +0.1 854,486 - -0.5 854,492 + -0.6 854,492 + -0.3 854,619 - MMP_RS04490 0.22 +3.3 854,638 - MMP_RS04490 0.26 -0.2 854,638 - MMP_RS04490 0.26 -0.3 854,638 - MMP_RS04490 0.26 -0.3 854,638 - MMP_RS04490 0.26 -0.7 854,638 - MMP_RS04490 0.26 -0.2 854,639 + MMP_RS04490 0.26 +0.0 854,665 + MMP_RS04490 0.32 -0.6 854,698 + MMP_RS04490 0.39 +0.6 854,706 + MMP_RS04490 0.40 -0.3 854,756 + MMP_RS04490 0.51 -0.0 854,768 + MMP_RS04490 0.53 +0.3 854,837 + MMP_RS04490 0.68 -0.8 854,841 - MMP_RS04490 0.69 +0.2 854,849 + MMP_RS04490 0.70 +0.4 854,862 - MMP_RS04490 0.73 -0.3 854,862 - MMP_RS04490 0.73 -0.2 854,888 - MMP_RS04490 0.79 -0.2 854,926 - MMP_RS04490 0.87 +0.1 854,926 - MMP_RS04490 0.87 +1.0 854,927 + MMP_RS04490 0.87 +1.0 854,931 - MMP_RS04490 0.88 -0.0 854,965 - +0.3 854,965 - +0.0 854,966 + +0.5 855,040 + -0.1 855,041 - +0.1 855,066 + -0.7 855,230 - MMP_RS04495 0.20 +0.3 855,262 + MMP_RS04495 0.23 +0.3 855,540 + MMP_RS04495 0.46 +3.8 855,548 - MMP_RS04495 0.47 -0.9 855,586 - MMP_RS04495 0.50 -0.4 855,825 + MMP_RS04495 0.71 +0.0 855,835 - MMP_RS04495 0.72 -0.2 855,857 - MMP_RS04495 0.74 +0.5 855,857 - MMP_RS04495 0.74 -0.7 855,887 - MMP_RS04495 0.76 +0.7 855,888 + MMP_RS04495 0.76 +0.4 855,888 + MMP_RS04495 0.76 -0.4 855,888 + MMP_RS04495 0.76 +0.5 855,911 - MMP_RS04495 0.78 +0.2 856,023 + MMP_RS04495 0.88 +0.7 856,114 + +0.0 856,128 - -0.3 856,128 - +0.4 856,129 + -0.0 856,130 - +0.5 856,131 + -0.3 856,166 + -0.1 856,167 - -0.0 856,167 - +0.1 856,167 - +2.0 856,168 + +0.4 856,168 + -0.1 856,168 + +0.8 856,168 + -0.3 856,170 - +0.5 856,170 - -0.4 856,171 + -0.2 856,171 + +0.1 856,173 + +0.3 856,173 + -0.0 856,241 + +0.0 856,350 + -1.2 856,397 - MMP_RS04500 0.12 +0.2 856,401 - MMP_RS04500 0.13 +0.5 856,402 + MMP_RS04500 0.13 -1.6 856,457 - MMP_RS04500 0.17 -0.6 856,540 - MMP_RS04500 0.23 -0.2 856,600 - MMP_RS04500 0.27 -0.6 856,600 - MMP_RS04500 0.27 -0.0 856,677 + MMP_RS04500 0.32 +0.2 856,678 - MMP_RS04500 0.32 -0.4 856,726 + MMP_RS04500 0.36 -0.5 856,745 + MMP_RS04500 0.37 -0.5 856,763 + MMP_RS04500 0.39 -0.2 856,763 + MMP_RS04500 0.39 -0.4 856,771 - MMP_RS04500 0.39 +0.3 856,840 - MMP_RS04500 0.44 -0.6 856,841 + MMP_RS04500 0.44 -0.6 856,842 - MMP_RS04500 0.44 +0.0 856,843 + MMP_RS04500 0.44 +0.4 856,843 + MMP_RS04500 0.44 -0.2 856,843 + MMP_RS04500 0.44 -0.0 856,843 + MMP_RS04500 0.44 -0.1 856,843 + MMP_RS04500 0.44 -0.7 856,845 - MMP_RS04500 0.44 -0.6 856,845 - MMP_RS04500 0.44 -1.2 856,905 - MMP_RS04500 0.49 -0.3 856,906 + MMP_RS04500 0.49 -0.5 856,933 - MMP_RS04500 0.51 -1.0 856,933 - MMP_RS04500 0.51 -0.2 856,949 + MMP_RS04500 0.52 -0.2 856,963 + MMP_RS04500 0.53 -0.2 857,048 - MMP_RS04500 0.59 -0.4 857,066 - MMP_RS04500 0.60 -0.5
Or see this region's nucleotide sequence