Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04170 and MMP_RS04175 overlap by 8 nucleotides MMP_RS04175 and MMP_RS08975 are separated by 258 nucleotides MMP_RS08975 and MMP_RS04180 are separated by 196 nucleotides
MMP_RS04170: MMP_RS04170 - DUF362 domain-containing protein, at 792,358 to 793,440
_RS04170
MMP_RS04175: MMP_RS04175 - permease, at 793,433 to 794,335
_RS04175
MMP_RS08975: MMP_RS08975 - hypothetical protein, at 794,594 to 794,749
_RS08975
MMP_RS04180: MMP_RS04180 - iron-containing alcohol dehydrogenase, at 794,946 to 796,115
_RS04180
Position (kb) 793
794
795 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 792.462 kb on - strand at 792.488 kb on - strand, within MMP_RS04170 at 792.489 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.493 kb on + strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.495 kb on - strand, within MMP_RS04170 at 792.531 kb on - strand, within MMP_RS04170 at 792.534 kb on - strand, within MMP_RS04170 at 792.617 kb on + strand, within MMP_RS04170 at 792.651 kb on + strand, within MMP_RS04170 at 792.688 kb on + strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.691 kb on - strand, within MMP_RS04170 at 792.695 kb on - strand, within MMP_RS04170 at 792.696 kb on + strand, within MMP_RS04170 at 792.722 kb on - strand, within MMP_RS04170 at 792.729 kb on + strand, within MMP_RS04170 at 792.795 kb on - strand, within MMP_RS04170 at 792.803 kb on - strand, within MMP_RS04170 at 792.822 kb on - strand, within MMP_RS04170 at 792.828 kb on - strand, within MMP_RS04170 at 793.060 kb on - strand, within MMP_RS04170 at 793.061 kb on + strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.062 kb on - strand, within MMP_RS04170 at 793.098 kb on - strand, within MMP_RS04170 at 793.152 kb on + strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.172 kb on - strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.173 kb on + strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.190 kb on - strand, within MMP_RS04170 at 793.194 kb on - strand, within MMP_RS04170 at 793.195 kb on + strand, within MMP_RS04170 at 793.252 kb on + strand, within MMP_RS04170 at 793.301 kb on - strand, within MMP_RS04170 at 793.371 kb on - strand at 793.444 kb on + strand at 793.475 kb on - strand at 793.476 kb on + strand at 793.661 kb on - strand, within MMP_RS04175 at 793.662 kb on + strand, within MMP_RS04175 at 793.670 kb on + strand, within MMP_RS04175 at 793.693 kb on - strand, within MMP_RS04175 at 793.741 kb on - strand, within MMP_RS04175 at 793.750 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.770 kb on + strand, within MMP_RS04175 at 793.860 kb on - strand, within MMP_RS04175 at 793.906 kb on - strand, within MMP_RS04175 at 793.906 kb on - strand, within MMP_RS04175 at 793.945 kb on + strand, within MMP_RS04175 at 793.967 kb on + strand, within MMP_RS04175 at 793.986 kb on + strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.027 kb on - strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.028 kb on + strand, within MMP_RS04175 at 794.113 kb on + strand, within MMP_RS04175 at 794.114 kb on - strand, within MMP_RS04175 at 794.131 kb on - strand, within MMP_RS04175 at 794.146 kb on - strand, within MMP_RS04175 at 794.147 kb on + strand, within MMP_RS04175 at 794.274 kb on + strand at 794.285 kb on + strand at 794.291 kb on + strand at 794.291 kb on + strand at 794.293 kb on + strand at 794.333 kb on - strand at 794.333 kb on - strand at 794.334 kb on + strand at 794.368 kb on - strand at 794.373 kb on + strand at 794.395 kb on + strand at 794.399 kb on + strand at 794.409 kb on - strand at 794.450 kb on - strand at 794.451 kb on + strand at 794.459 kb on - strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.460 kb on + strand at 794.461 kb on - strand at 794.461 kb on - strand at 794.461 kb on - strand at 794.462 kb on + strand at 794.462 kb on + strand at 794.462 kb on + strand at 794.462 kb on + strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.463 kb on - strand at 794.464 kb on + strand at 794.464 kb on + strand at 794.464 kb on + strand at 794.465 kb on - strand at 794.465 kb on - strand at 794.469 kb on + strand at 794.518 kb on + strand at 794.590 kb on - strand at 794.597 kb on - strand at 794.597 kb on - strand at 794.597 kb on - strand at 794.597 kb on - strand at 794.598 kb on + strand at 794.598 kb on + strand at 794.606 kb on - strand at 794.644 kb on + strand, within MMP_RS08975 at 794.668 kb on + strand, within MMP_RS08975 at 794.690 kb on + strand, within MMP_RS08975 at 794.690 kb on + strand, within MMP_RS08975 at 794.819 kb on - strand at 794.840 kb on - strand at 794.841 kb on + strand at 794.844 kb on - strand at 794.849 kb on - strand at 794.850 kb on + strand at 794.850 kb on + strand at 794.850 kb on + strand at 794.850 kb on + strand at 794.851 kb on - strand at 794.851 kb on - strand at 794.852 kb on + strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.853 kb on - strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.854 kb on + strand at 794.856 kb on + strand at 794.908 kb on - strand at 794.908 kb on - strand at 794.911 kb on - strand at 794.945 kb on - strand at 794.961 kb on - strand at 794.961 kb on - strand at 795.122 kb on + strand, within MMP_RS04180 at 795.133 kb on - strand, within MMP_RS04180 at 795.134 kb on + strand, within MMP_RS04180
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 792,462 - +0.1 792,488 - MMP_RS04170 0.12 -0.1 792,489 + MMP_RS04170 0.12 -0.0 792,493 + MMP_RS04170 0.12 +0.1 792,493 + MMP_RS04170 0.12 -0.3 792,495 - MMP_RS04170 0.13 +1.1 792,495 - MMP_RS04170 0.13 +0.1 792,531 - MMP_RS04170 0.16 +0.2 792,534 - MMP_RS04170 0.16 -0.1 792,617 + MMP_RS04170 0.24 +0.5 792,651 + MMP_RS04170 0.27 +1.2 792,688 + MMP_RS04170 0.30 +0.2 792,691 - MMP_RS04170 0.31 +1.4 792,691 - MMP_RS04170 0.31 -0.4 792,695 - MMP_RS04170 0.31 -0.3 792,696 + MMP_RS04170 0.31 +0.5 792,722 - MMP_RS04170 0.34 -0.2 792,729 + MMP_RS04170 0.34 +0.4 792,795 - MMP_RS04170 0.40 +0.0 792,803 - MMP_RS04170 0.41 +0.2 792,822 - MMP_RS04170 0.43 -0.0 792,828 - MMP_RS04170 0.43 -1.0 793,060 - MMP_RS04170 0.65 +0.5 793,061 + MMP_RS04170 0.65 +0.1 793,062 - MMP_RS04170 0.65 +0.5 793,062 - MMP_RS04170 0.65 -0.7 793,098 - MMP_RS04170 0.68 +0.4 793,152 + MMP_RS04170 0.73 +0.4 793,172 - MMP_RS04170 0.75 -0.3 793,172 - MMP_RS04170 0.75 +0.2 793,173 + MMP_RS04170 0.75 -0.3 793,173 + MMP_RS04170 0.75 +0.6 793,190 - MMP_RS04170 0.77 +0.2 793,190 - MMP_RS04170 0.77 +0.1 793,190 - MMP_RS04170 0.77 +0.1 793,194 - MMP_RS04170 0.77 -0.2 793,195 + MMP_RS04170 0.77 +0.1 793,252 + MMP_RS04170 0.83 -0.1 793,301 - MMP_RS04170 0.87 +2.2 793,371 - +0.2 793,444 + -0.1 793,475 - +0.4 793,476 + +0.7 793,661 - MMP_RS04175 0.25 +0.2 793,662 + MMP_RS04175 0.25 +0.4 793,670 + MMP_RS04175 0.26 +0.5 793,693 - MMP_RS04175 0.29 +0.0 793,741 - MMP_RS04175 0.34 -0.2 793,750 + MMP_RS04175 0.35 -0.1 793,770 + MMP_RS04175 0.37 +0.6 793,770 + MMP_RS04175 0.37 +0.6 793,770 + MMP_RS04175 0.37 -0.5 793,860 - MMP_RS04175 0.47 -0.1 793,906 - MMP_RS04175 0.52 +0.5 793,906 - MMP_RS04175 0.52 +0.3 793,945 + MMP_RS04175 0.57 +0.4 793,967 + MMP_RS04175 0.59 -0.0 793,986 + MMP_RS04175 0.61 +0.2 794,027 - MMP_RS04175 0.66 -0.2 794,027 - MMP_RS04175 0.66 -0.6 794,028 + MMP_RS04175 0.66 -0.3 794,028 + MMP_RS04175 0.66 +0.0 794,113 + MMP_RS04175 0.75 +4.2 794,114 - MMP_RS04175 0.75 +0.2 794,131 - MMP_RS04175 0.77 -0.1 794,146 - MMP_RS04175 0.79 +0.3 794,147 + MMP_RS04175 0.79 +4.2 794,274 + +0.2 794,285 + -0.6 794,291 + +0.3 794,291 + +0.2 794,293 + +0.2 794,333 - +0.2 794,333 - +0.5 794,334 + +0.1 794,368 - +0.6 794,373 + +0.0 794,395 + -0.5 794,399 + +0.2 794,409 - +0.6 794,450 - +0.2 794,451 + -0.3 794,459 - +0.2 794,460 + +0.2 794,460 + -0.3 794,460 + -0.4 794,460 + -0.7 794,460 + -0.4 794,460 + -0.5 794,461 - +0.2 794,461 - -0.1 794,461 - +0.2 794,462 + -0.3 794,462 + +0.7 794,462 + +0.2 794,462 + +0.3 794,463 - -0.1 794,463 - +0.7 794,463 - -0.0 794,463 - +0.5 794,463 - -0.6 794,463 - -0.2 794,464 + -0.4 794,464 + +0.1 794,464 + +0.7 794,465 - -0.1 794,465 - -0.1 794,469 + +0.5 794,518 + +0.0 794,590 - +0.8 794,597 - +0.9 794,597 - -0.4 794,597 - -0.2 794,597 - -0.0 794,598 + +0.3 794,598 + +0.6 794,606 - -0.2 794,644 + MMP_RS08975 0.32 -0.4 794,668 + MMP_RS08975 0.47 +0.0 794,690 + MMP_RS08975 0.62 -0.1 794,690 + MMP_RS08975 0.62 +0.3 794,819 - +0.1 794,840 - -0.4 794,841 + +0.3 794,844 - -0.1 794,849 - +0.1 794,850 + -0.2 794,850 + -0.5 794,850 + -0.7 794,850 + +0.3 794,851 - +0.4 794,851 - -0.1 794,852 + -0.4 794,853 - -0.1 794,853 - +0.1 794,853 - -0.3 794,853 - -0.1 794,853 - +0.6 794,853 - +0.8 794,854 + -0.0 794,854 + -0.4 794,854 + +0.3 794,854 + +0.1 794,854 + +0.5 794,854 + -0.3 794,854 + -0.9 794,854 + +0.3 794,854 + +0.3 794,854 + +4.1 794,856 + +0.0 794,908 - -1.0 794,908 - +0.0 794,911 - +0.0 794,945 - +0.3 794,961 - -0.3 794,961 - +0.2 795,122 + MMP_RS04180 0.15 +0.3 795,133 - MMP_RS04180 0.16 +0.2 795,134 + MMP_RS04180 0.16 +0.1
Or see this region's nucleotide sequence