Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04045 and MMP_RS04050 are separated by 100 nucleotides MMP_RS04050 and MMP_RS04055 are separated by 15 nucleotides MMP_RS04055 and MMP_RS04060 are separated by 26 nucleotides MMP_RS04060 and MMP_RS04065 are separated by 29 nucleotides
MMP_RS04045: MMP_RS04045 - hypothetical protein, at 766,733 to 767,473
_RS04045
MMP_RS04050: MMP_RS04050 - hypothetical protein, at 767,574 to 767,810
_RS04050
MMP_RS04055: MMP_RS04055 - hypothetical protein, at 767,826 to 768,143
_RS04055
MMP_RS04060: MMP_RS04060 - hypothetical protein, at 768,170 to 768,685
_RS04060
MMP_RS04065: MMP_RS04065 - hypothetical protein, at 768,715 to 770,745
_RS04065
Position (kb) 767
768
769 Strain fitness (log2 ratio) -1
0
1 at 766.897 kb on - strand, within MMP_RS04045 at 766.985 kb on - strand, within MMP_RS04045 at 767.046 kb on + strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.054 kb on + strand, within MMP_RS04045 at 767.145 kb on - strand, within MMP_RS04045 at 767.182 kb on - strand, within MMP_RS04045 at 767.186 kb on - strand, within MMP_RS04045 at 767.199 kb on + strand, within MMP_RS04045 at 767.252 kb on - strand, within MMP_RS04045 at 767.274 kb on + strand, within MMP_RS04045 at 767.303 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.397 kb on - strand, within MMP_RS04045 at 767.398 kb on + strand, within MMP_RS04045 at 767.576 kb on + strand at 767.581 kb on + strand at 767.621 kb on - strand, within MMP_RS04050 at 767.677 kb on - strand, within MMP_RS04050 at 767.712 kb on + strand, within MMP_RS04050 at 767.742 kb on - strand, within MMP_RS04050 at 767.787 kb on - strand at 767.924 kb on + strand, within MMP_RS04055 at 768.292 kb on + strand, within MMP_RS04060 at 768.317 kb on - strand, within MMP_RS04060 at 768.425 kb on - strand, within MMP_RS04060 at 768.426 kb on + strand, within MMP_RS04060 at 768.491 kb on - strand, within MMP_RS04060 at 768.575 kb on - strand, within MMP_RS04060 at 768.576 kb on + strand, within MMP_RS04060 at 768.668 kb on + strand at 768.775 kb on - strand at 768.951 kb on + strand, within MMP_RS04065 at 768.992 kb on - strand, within MMP_RS04065 at 768.993 kb on + strand, within MMP_RS04065 at 769.010 kb on - strand, within MMP_RS04065 at 769.064 kb on - strand, within MMP_RS04065 at 769.103 kb on + strand, within MMP_RS04065
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 766,897 - MMP_RS04045 0.22 -0.3 766,985 - MMP_RS04045 0.34 -0.7 767,046 + MMP_RS04045 0.42 +0.1 767,053 - MMP_RS04045 0.43 -0.1 767,053 - MMP_RS04045 0.43 +0.3 767,054 + MMP_RS04045 0.43 -0.5 767,145 - MMP_RS04045 0.56 +0.0 767,182 - MMP_RS04045 0.61 +0.2 767,186 - MMP_RS04045 0.61 +0.4 767,199 + MMP_RS04045 0.63 +0.3 767,252 - MMP_RS04045 0.70 +0.0 767,274 + MMP_RS04045 0.73 -0.4 767,303 - MMP_RS04045 0.77 +0.4 767,397 - MMP_RS04045 0.90 +0.2 767,397 - MMP_RS04045 0.90 +0.2 767,398 + MMP_RS04045 0.90 +0.4 767,576 + -0.2 767,581 + +0.4 767,621 - MMP_RS04050 0.20 +0.0 767,677 - MMP_RS04050 0.43 -0.6 767,712 + MMP_RS04050 0.58 -0.3 767,742 - MMP_RS04050 0.71 -0.1 767,787 - +0.1 767,924 + MMP_RS04055 0.31 +0.4 768,292 + MMP_RS04060 0.24 -0.0 768,317 - MMP_RS04060 0.28 +0.5 768,425 - MMP_RS04060 0.49 -0.5 768,426 + MMP_RS04060 0.50 +0.1 768,491 - MMP_RS04060 0.62 +0.2 768,575 - MMP_RS04060 0.78 +0.2 768,576 + MMP_RS04060 0.79 +0.0 768,668 + -1.7 768,775 - -0.0 768,951 + MMP_RS04065 0.12 -0.2 768,992 - MMP_RS04065 0.14 -0.2 768,993 + MMP_RS04065 0.14 -1.2 769,010 - MMP_RS04065 0.15 +0.3 769,064 - MMP_RS04065 0.17 -0.1 769,103 + MMP_RS04065 0.19 +0.5
Or see this region's nucleotide sequence