Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03745 and MMP_RS03750 are separated by 13 nucleotides MMP_RS03750 and MMP_RS03755 are separated by 12 nucleotides MMP_RS03755 and MMP_RS03760 are separated by 383 nucleotides MMP_RS03760 and MMP_RS03765 are separated by 37 nucleotides
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302
_RS03750
MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851
_RS03755
MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585
_RS03760
MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030
_RS03765
Position (kb) 710
711 Strain fitness (log2 ratio) -1
0
1
2 at 709.413 kb on + strand, within MMP_RS03745 at 709.416 kb on - strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.417 kb on + strand, within MMP_RS03745 at 709.640 kb on - strand, within MMP_RS03745 at 709.657 kb on + strand, within MMP_RS03745 at 709.796 kb on - strand at 709.797 kb on + strand at 709.927 kb on + strand, within MMP_RS03750 at 710.010 kb on - strand, within MMP_RS03750 at 710.091 kb on - strand, within MMP_RS03750 at 710.159 kb on + strand, within MMP_RS03750 at 710.172 kb on + strand, within MMP_RS03750 at 710.175 kb on - strand, within MMP_RS03750 at 710.175 kb on - strand, within MMP_RS03750 at 710.176 kb on + strand, within MMP_RS03750 at 710.248 kb on + strand, within MMP_RS03750 at 710.301 kb on + strand at 710.326 kb on - strand at 710.375 kb on + strand, within MMP_RS03755 at 710.415 kb on + strand, within MMP_RS03755 at 710.478 kb on + strand, within MMP_RS03755 at 710.483 kb on + strand, within MMP_RS03755 at 710.483 kb on + strand, within MMP_RS03755 at 710.502 kb on - strand, within MMP_RS03755 at 710.502 kb on - strand, within MMP_RS03755 at 710.503 kb on + strand, within MMP_RS03755 at 710.524 kb on - strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.525 kb on + strand, within MMP_RS03755 at 710.616 kb on + strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.653 kb on - strand, within MMP_RS03755 at 710.750 kb on + strand, within MMP_RS03755 at 710.767 kb on - strand, within MMP_RS03755 at 710.783 kb on - strand, within MMP_RS03755 at 710.784 kb on + strand, within MMP_RS03755 at 710.818 kb on + strand at 710.831 kb on - strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.875 kb on - strand at 710.875 kb on - strand at 710.942 kb on + strand at 711.055 kb on - strand at 711.055 kb on - strand at 711.082 kb on - strand at 711.086 kb on + strand at 711.088 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.094 kb on - strand at 711.202 kb on - strand at 711.202 kb on - strand at 711.205 kb on + strand at 711.255 kb on + strand at 711.342 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.373 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.412 kb on - strand, within MMP_RS03760 at 711.427 kb on - strand, within MMP_RS03760 at 711.435 kb on + strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.566 kb on + strand at 711.569 kb on - strand at 711.598 kb on - strand at 711.598 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.633 kb on - strand at 711.633 kb on - strand at 711.690 kb on - strand, within MMP_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 709,413 + MMP_RS03745 0.65 -0.3 709,416 - MMP_RS03745 0.66 -0.2 709,417 + MMP_RS03745 0.66 -0.2 709,417 + MMP_RS03745 0.66 +0.3 709,640 - MMP_RS03745 0.83 -0.4 709,657 + MMP_RS03745 0.84 +0.6 709,796 - +0.2 709,797 + +0.0 709,927 + MMP_RS03750 0.12 +0.2 710,010 - MMP_RS03750 0.31 +0.2 710,091 - MMP_RS03750 0.50 -0.2 710,159 + MMP_RS03750 0.66 +0.8 710,172 + MMP_RS03750 0.69 -0.2 710,175 - MMP_RS03750 0.70 -0.0 710,175 - MMP_RS03750 0.70 -0.3 710,176 + MMP_RS03750 0.70 -0.5 710,248 + MMP_RS03750 0.87 -0.0 710,301 + +0.6 710,326 - +0.4 710,375 + MMP_RS03755 0.11 +0.8 710,415 + MMP_RS03755 0.19 +0.8 710,478 + MMP_RS03755 0.30 +0.6 710,483 + MMP_RS03755 0.31 +0.9 710,483 + MMP_RS03755 0.31 +1.2 710,502 - MMP_RS03755 0.35 +1.0 710,502 - MMP_RS03755 0.35 -0.0 710,503 + MMP_RS03755 0.35 -0.4 710,524 - MMP_RS03755 0.39 +0.1 710,525 + MMP_RS03755 0.39 +0.4 710,525 + MMP_RS03755 0.39 +0.1 710,525 + MMP_RS03755 0.39 -0.5 710,616 + MMP_RS03755 0.56 +0.1 710,636 - MMP_RS03755 0.60 +0.4 710,636 - MMP_RS03755 0.60 +0.9 710,637 + MMP_RS03755 0.60 +0.1 710,637 + MMP_RS03755 0.60 +0.5 710,643 - MMP_RS03755 0.61 +0.5 710,643 - MMP_RS03755 0.61 +0.8 710,643 - MMP_RS03755 0.61 +0.3 710,643 - MMP_RS03755 0.61 -0.8 710,644 + MMP_RS03755 0.61 +0.4 710,644 + MMP_RS03755 0.61 +0.6 710,653 - MMP_RS03755 0.63 +0.3 710,750 + MMP_RS03755 0.81 +0.5 710,767 - MMP_RS03755 0.84 +0.2 710,783 - MMP_RS03755 0.87 +0.5 710,784 + MMP_RS03755 0.87 +0.9 710,818 + +0.5 710,831 - +0.5 710,832 + -0.5 710,832 + +0.3 710,832 + +0.1 710,875 - +0.3 710,875 - +0.7 710,942 + +0.4 711,055 - +0.3 711,055 - -0.9 711,082 - +0.3 711,086 + +0.2 711,088 - +0.5 711,092 - +0.1 711,092 - +0.1 711,092 - +0.3 711,094 - +0.3 711,202 - +0.3 711,202 - +0.1 711,205 + -0.1 711,255 + -1.0 711,342 - MMP_RS03760 0.30 -0.4 711,371 - MMP_RS03760 0.39 +0.1 711,371 - MMP_RS03760 0.39 -0.4 711,371 - MMP_RS03760 0.39 -0.5 711,371 - MMP_RS03760 0.39 -0.2 711,372 + MMP_RS03760 0.39 +0.0 711,372 + MMP_RS03760 0.39 -0.1 711,372 + MMP_RS03760 0.39 -0.4 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 -0.2 711,372 + MMP_RS03760 0.39 +0.1 711,373 - MMP_RS03760 0.39 +0.1 711,402 - MMP_RS03760 0.48 -0.6 711,402 - MMP_RS03760 0.48 +0.5 711,408 - MMP_RS03760 0.49 +2.4 711,408 - MMP_RS03760 0.49 +0.4 711,412 - MMP_RS03760 0.50 +0.9 711,427 - MMP_RS03760 0.55 +0.4 711,435 + MMP_RS03760 0.57 +0.9 711,444 - MMP_RS03760 0.60 +0.3 711,444 - MMP_RS03760 0.60 -0.1 711,566 + +0.5 711,569 - -1.1 711,598 - +0.4 711,598 - +0.3 711,602 - -0.1 711,602 - +0.9 711,602 - +1.1 711,633 - +0.4 711,633 - +0.2 711,690 - MMP_RS03765 0.16 +0.0
Or see this region's nucleotide sequence