Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02990

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02980 and MMP_RS02985 are separated by 19 nucleotidesMMP_RS02985 and MMP_RS02990 are separated by 41 nucleotidesMMP_RS02990 and MMP_RS02995 are separated by 20 nucleotidesMMP_RS02995 and MMP_RS03000 are separated by 22 nucleotides MMP_RS02980: MMP_RS02980 - ATP-grasp domain-containing protein, at 563,804 to 564,712 _RS02980 MMP_RS02985: MMP_RS02985 - hypothetical protein, at 564,732 to 565,655 _RS02985 MMP_RS02990: MMP_RS02990 - AMP-binding protein, at 565,697 to 567,346 _RS02990 MMP_RS02995: MMP_RS02995 - acyl-CoA thioesterase, at 567,367 to 567,774 _RS02995 MMP_RS03000: MMP_RS03000 - cupin domain-containing protein, at 567,797 to 568,336 _RS03000 Position (kb) 565 566 567 568Strain fitness (log2 ratio) -1 0 1 2 3 4at 564.748 kb on + strandat 564.972 kb on - strand, within MMP_RS02985at 565.041 kb on + strand, within MMP_RS02985at 565.269 kb on - strand, within MMP_RS02985at 565.490 kb on - strand, within MMP_RS02985at 565.568 kb on - strandat 565.603 kb on + strandat 565.609 kb on - strandat 565.646 kb on - strandat 565.649 kb on + strandat 565.649 kb on + strandat 565.649 kb on + strandat 565.649 kb on + strandat 565.668 kb on + strandat 565.692 kb on + strandat 565.693 kb on - strandat 565.694 kb on + strandat 565.695 kb on - strandat 565.819 kb on - strandat 565.819 kb on - strandat 565.867 kb on - strand, within MMP_RS02990at 565.875 kb on - strand, within MMP_RS02990at 565.972 kb on + strand, within MMP_RS02990at 565.998 kb on - strand, within MMP_RS02990at 566.345 kb on + strand, within MMP_RS02990at 566.362 kb on + strand, within MMP_RS02990at 566.362 kb on + strand, within MMP_RS02990at 566.365 kb on - strand, within MMP_RS02990at 566.376 kb on + strand, within MMP_RS02990at 566.489 kb on + strand, within MMP_RS02990at 566.500 kb on + strand, within MMP_RS02990at 566.526 kb on + strand, within MMP_RS02990at 566.726 kb on - strand, within MMP_RS02990at 566.774 kb on - strand, within MMP_RS02990at 566.775 kb on + strand, within MMP_RS02990at 566.858 kb on + strand, within MMP_RS02990at 566.858 kb on + strand, within MMP_RS02990at 566.863 kb on + strand, within MMP_RS02990at 566.907 kb on + strand, within MMP_RS02990at 566.993 kb on - strand, within MMP_RS02990at 566.994 kb on + strand, within MMP_RS02990at 567.072 kb on - strand, within MMP_RS02990at 567.072 kb on - strand, within MMP_RS02990at 567.152 kb on + strand, within MMP_RS02990at 567.328 kb on - strandat 567.347 kb on + strandat 567.362 kb on - strandat 567.398 kb on + strandat 567.398 kb on + strandat 567.512 kb on - strand, within MMP_RS02995at 567.520 kb on + strand, within MMP_RS02995at 567.549 kb on + strand, within MMP_RS02995at 567.578 kb on - strand, within MMP_RS02995at 567.578 kb on - strand, within MMP_RS02995at 567.641 kb on + strand, within MMP_RS02995at 567.681 kb on - strand, within MMP_RS02995at 567.718 kb on - strand, within MMP_RS02995at 567.810 kb on - strandat 567.811 kb on + strandat 567.811 kb on + strandat 567.812 kb on - strandat 567.815 kb on - strandat 567.815 kb on - strandat 567.816 kb on + strandat 567.854 kb on - strand, within MMP_RS03000at 567.855 kb on + strand, within MMP_RS03000at 567.855 kb on + strand, within MMP_RS03000at 567.869 kb on - strand, within MMP_RS03000at 567.870 kb on + strand, within MMP_RS03000at 567.879 kb on - strand, within MMP_RS03000at 567.879 kb on - strand, within MMP_RS03000at 567.880 kb on + strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.882 kb on - strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.883 kb on + strand, within MMP_RS03000at 567.884 kb on - strand, within MMP_RS03000at 567.884 kb on - strand, within MMP_RS03000at 567.885 kb on + strand, within MMP_RS03000at 567.885 kb on + strand, within MMP_RS03000at 567.909 kb on - strand, within MMP_RS03000at 567.924 kb on - strand, within MMP_RS03000at 567.950 kb on - strand, within MMP_RS03000at 567.951 kb on + strand, within MMP_RS03000at 567.951 kb on + strand, within MMP_RS03000at 567.954 kb on - strand, within MMP_RS03000at 567.955 kb on + strand, within MMP_RS03000at 567.955 kb on + strand, within MMP_RS03000at 568.019 kb on - strand, within MMP_RS03000at 568.100 kb on - strand, within MMP_RS03000at 568.101 kb on + strand, within MMP_RS03000at 568.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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564,748 + -0.0
564,972 - MMP_RS02985 0.26 +2.3
565,041 + MMP_RS02985 0.33 +0.4
565,269 - MMP_RS02985 0.58 +0.4
565,490 - MMP_RS02985 0.82 +0.3
565,568 - -1.0
565,603 + +0.3
565,609 - +0.9
565,646 - -0.1
565,649 + -0.2
565,649 + +0.4
565,649 + -0.2
565,649 + +0.7
565,668 + +0.4
565,692 + +0.1
565,693 - -0.0
565,694 + +0.4
565,695 - +1.2
565,819 - -0.2
565,819 - +0.2
565,867 - MMP_RS02990 0.10 +4.0
565,875 - MMP_RS02990 0.11 +0.7
565,972 + MMP_RS02990 0.17 -0.7
565,998 - MMP_RS02990 0.18 +2.2
566,345 + MMP_RS02990 0.39 +0.4
566,362 + MMP_RS02990 0.40 +0.7
566,362 + MMP_RS02990 0.40 +0.3
566,365 - MMP_RS02990 0.40 +0.2
566,376 + MMP_RS02990 0.41 +0.2
566,489 + MMP_RS02990 0.48 +0.3
566,500 + MMP_RS02990 0.49 +0.4
566,526 + MMP_RS02990 0.50 +0.3
566,726 - MMP_RS02990 0.62 +0.2
566,774 - MMP_RS02990 0.65 +0.4
566,775 + MMP_RS02990 0.65 +0.3
566,858 + MMP_RS02990 0.70 +0.0
566,858 + MMP_RS02990 0.70 +0.8
566,863 + MMP_RS02990 0.71 +0.1
566,907 + MMP_RS02990 0.73 +0.1
566,993 - MMP_RS02990 0.79 +0.4
566,994 + MMP_RS02990 0.79 +0.2
567,072 - MMP_RS02990 0.83 -0.6
567,072 - MMP_RS02990 0.83 +0.4
567,152 + MMP_RS02990 0.88 +0.1
567,328 - -0.6
567,347 + -0.1
567,362 - +0.1
567,398 + -1.1
567,398 + +0.1
567,512 - MMP_RS02995 0.36 +0.9
567,520 + MMP_RS02995 0.38 -1.1
567,549 + MMP_RS02995 0.45 +0.3
567,578 - MMP_RS02995 0.52 -0.6
567,578 - MMP_RS02995 0.52 -0.1
567,641 + MMP_RS02995 0.67 -0.8
567,681 - MMP_RS02995 0.77 -0.2
567,718 - MMP_RS02995 0.86 +0.1
567,810 - -0.0
567,811 + +0.1
567,811 + -0.2
567,812 - -0.1
567,815 - +0.2
567,815 - -0.2
567,816 + +0.2
567,854 - MMP_RS03000 0.11 -0.1
567,855 + MMP_RS03000 0.11 +0.3
567,855 + MMP_RS03000 0.11 +0.1
567,869 - MMP_RS03000 0.13 -0.2
567,870 + MMP_RS03000 0.14 +0.1
567,879 - MMP_RS03000 0.15 -0.5
567,879 - MMP_RS03000 0.15 -1.3
567,880 + MMP_RS03000 0.15 -0.2
567,882 - MMP_RS03000 0.16 -0.1
567,882 - MMP_RS03000 0.16 -0.5
567,882 - MMP_RS03000 0.16 +0.4
567,883 + MMP_RS03000 0.16 -0.3
567,883 + MMP_RS03000 0.16 +0.1
567,883 + MMP_RS03000 0.16 +0.3
567,883 + MMP_RS03000 0.16 +0.8
567,884 - MMP_RS03000 0.16 +0.2
567,884 - MMP_RS03000 0.16 +0.3
567,885 + MMP_RS03000 0.16 +3.3
567,885 + MMP_RS03000 0.16 +0.0
567,909 - MMP_RS03000 0.21 +0.0
567,924 - MMP_RS03000 0.24 -0.1
567,950 - MMP_RS03000 0.28 +0.2
567,951 + MMP_RS03000 0.29 -0.5
567,951 + MMP_RS03000 0.29 +0.4
567,954 - MMP_RS03000 0.29 +0.6
567,955 + MMP_RS03000 0.29 -0.2
567,955 + MMP_RS03000 0.29 -0.7
568,019 - MMP_RS03000 0.41 -0.6
568,100 - MMP_RS03000 0.56 +0.2
568,101 + MMP_RS03000 0.56 -0.0
568,285 - +0.4

Or see this region's nucleotide sequence