Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02885 and MMP_RS02890 are separated by 216 nucleotides MMP_RS02890 and MMP_RS02895 are separated by 61 nucleotides MMP_RS02895 and MMP_RS02900 are separated by 75 nucleotides MMP_RS02900 and MMP_RS02905 are separated by 9 nucleotides
MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601
_RS02885
MMP_RS02890: MMP_RS02890 - TIGR00296 family protein, at 550,818 to 551,429
_RS02890
MMP_RS02895: MMP_RS02895 - DHH family phosphoesterase, at 551,491 to 552,786
_RS02895
MMP_RS02900: MMP_RS02900 - imidazoleglycerol-phosphate dehydratase HisB, at 552,862 to 553,434
_RS02900
MMP_RS02905: MMP_RS02905 - 2-thiouracil desulfurase family protein, at 553,444 to 553,992
_RS02905
Position (kb) 551
552
553 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 550.585 kb on - strand at 550.651 kb on - strand at 550.713 kb on + strand at 550.740 kb on + strand at 550.858 kb on + strand at 550.874 kb on + strand at 550.874 kb on + strand at 550.946 kb on + strand, within MMP_RS02890 at 550.991 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.114 kb on + strand, within MMP_RS02890 at 551.170 kb on + strand, within MMP_RS02890 at 551.204 kb on - strand, within MMP_RS02890 at 551.237 kb on + strand, within MMP_RS02890 at 551.261 kb on - strand, within MMP_RS02890 at 551.343 kb on + strand, within MMP_RS02890 at 551.398 kb on - strand at 551.415 kb on - strand at 551.466 kb on + strand at 551.498 kb on - strand at 551.520 kb on - strand at 551.646 kb on + strand, within MMP_RS02895 at 552.050 kb on + strand, within MMP_RS02895 at 552.092 kb on - strand, within MMP_RS02895 at 552.113 kb on + strand, within MMP_RS02895 at 552.131 kb on + strand, within MMP_RS02895 at 552.187 kb on + strand, within MMP_RS02895 at 552.189 kb on + strand, within MMP_RS02895 at 552.300 kb on - strand, within MMP_RS02895 at 552.336 kb on + strand, within MMP_RS02895 at 552.422 kb on - strand, within MMP_RS02895 at 552.425 kb on + strand, within MMP_RS02895 at 552.433 kb on - strand, within MMP_RS02895 at 552.530 kb on - strand, within MMP_RS02895 at 552.828 kb on + strand at 552.829 kb on - strand at 552.829 kb on - strand at 552.830 kb on + strand at 552.832 kb on - strand at 552.833 kb on + strand at 552.833 kb on + strand at 552.834 kb on - strand at 552.918 kb on + strand at 553.313 kb on - strand, within MMP_RS02900 at 553.530 kb on - strand, within MMP_RS02905 at 553.717 kb on + strand, within MMP_RS02905 at 553.737 kb on + strand, within MMP_RS02905 at 553.746 kb on + strand, within MMP_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 550,585 - -0.7 550,651 - +0.4 550,713 + +0.5 550,740 + -0.3 550,858 + +0.3 550,874 + -0.1 550,874 + -0.3 550,946 + MMP_RS02890 0.21 +0.4 550,991 - MMP_RS02890 0.28 +0.0 551,113 - MMP_RS02890 0.48 +0.6 551,113 - MMP_RS02890 0.48 -0.0 551,114 + MMP_RS02890 0.48 +0.2 551,170 + MMP_RS02890 0.58 +0.2 551,204 - MMP_RS02890 0.63 +0.1 551,237 + MMP_RS02890 0.68 +0.1 551,261 - MMP_RS02890 0.72 +0.5 551,343 + MMP_RS02890 0.86 -0.4 551,398 - +0.8 551,415 - +0.3 551,466 + -0.5 551,498 - +0.1 551,520 - +0.2 551,646 + MMP_RS02895 0.12 +0.3 552,050 + MMP_RS02895 0.43 +0.3 552,092 - MMP_RS02895 0.46 +0.8 552,113 + MMP_RS02895 0.48 -0.1 552,131 + MMP_RS02895 0.49 +1.0 552,187 + MMP_RS02895 0.54 +0.5 552,189 + MMP_RS02895 0.54 +0.5 552,300 - MMP_RS02895 0.62 +0.5 552,336 + MMP_RS02895 0.65 +0.5 552,422 - MMP_RS02895 0.72 +0.8 552,425 + MMP_RS02895 0.72 +0.0 552,433 - MMP_RS02895 0.73 -0.1 552,530 - MMP_RS02895 0.80 +0.5 552,828 + +0.0 552,829 - +0.6 552,829 - -0.5 552,830 + -0.5 552,832 - -3.7 552,833 + -0.5 552,833 + +0.4 552,834 - -4.2 552,918 + -2.8 553,313 - MMP_RS02900 0.79 -3.5 553,530 - MMP_RS02905 0.16 +0.2 553,717 + MMP_RS02905 0.50 +0.6 553,737 + MMP_RS02905 0.53 +0.1 553,746 + MMP_RS02905 0.55 +0.3
Or see this region's nucleotide sequence