Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02585 and MMP_RS02590 are separated by 86 nucleotides MMP_RS02590 and MMP_RS02595 are separated by 212 nucleotides MMP_RS02595 and MMP_RS02600 are separated by 302 nucleotides MMP_RS02600 and MMP_RS02605 overlap by 7 nucleotides
MMP_RS02585: MMP_RS02585 - methyl-accepting chemotaxis protein, at 483,526 to 485,715
_RS02585
MMP_RS02590: MMP_RS02590 - low molecular weight phosphatase family protein, at 485,802 to 486,212
_RS02590
MMP_RS02595: MMP_RS02595 - putative zinc-binding protein, at 486,425 to 486,886
_RS02595
MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527
_RS02600
MMP_RS02605: MMP_RS02605 - MotA/TolQ/ExbB proton channel family protein, at 487,521 to 488,162
_RS02605
Position (kb) 486
487 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 485.685 kb on + strand at 485.689 kb on + strand at 485.754 kb on + strand at 485.783 kb on - strand at 485.844 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.899 kb on + strand, within MMP_RS02590 at 485.965 kb on + strand, within MMP_RS02590 at 485.965 kb on + strand, within MMP_RS02590 at 485.993 kb on - strand, within MMP_RS02590 at 486.169 kb on + strand, within MMP_RS02590 at 486.207 kb on + strand at 486.232 kb on - strand at 486.244 kb on - strand at 486.249 kb on - strand at 486.249 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.254 kb on + strand at 486.254 kb on + strand at 486.255 kb on - strand at 486.255 kb on - strand at 486.256 kb on + strand at 486.269 kb on - strand at 486.269 kb on - strand at 486.270 kb on + strand at 486.271 kb on - strand at 486.271 kb on - strand at 486.272 kb on + strand at 486.281 kb on - strand at 486.291 kb on - strand at 486.292 kb on + strand at 486.293 kb on - strand at 486.319 kb on - strand at 486.346 kb on - strand at 486.347 kb on + strand at 486.712 kb on - strand, within MMP_RS02595 at 486.886 kb on - strand at 486.890 kb on - strand at 486.929 kb on - strand at 486.934 kb on - strand at 486.937 kb on - strand at 486.937 kb on - strand at 486.938 kb on + strand at 486.981 kb on + strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.987 kb on - strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 486.988 kb on + strand at 487.065 kb on - strand at 487.066 kb on + strand at 487.072 kb on - strand at 487.073 kb on + strand at 487.073 kb on + strand at 487.083 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.090 kb on - strand at 487.091 kb on + strand at 487.094 kb on - strand at 487.094 kb on - strand at 487.095 kb on + strand at 487.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 485,685 + +0.1 485,689 + +0.1 485,754 + +0.9 485,783 - +0.3 485,844 - MMP_RS02590 0.10 +0.4 485,898 - MMP_RS02590 0.23 -0.1 485,898 - MMP_RS02590 0.23 -0.0 485,898 - MMP_RS02590 0.23 -0.2 485,898 - MMP_RS02590 0.23 -0.2 485,898 - MMP_RS02590 0.23 +0.2 485,898 - MMP_RS02590 0.23 +0.2 485,899 + MMP_RS02590 0.24 +1.1 485,965 + MMP_RS02590 0.40 +4.2 485,965 + MMP_RS02590 0.40 +0.0 485,993 - MMP_RS02590 0.46 -0.3 486,169 + MMP_RS02590 0.89 +0.3 486,207 + +0.0 486,232 - -0.3 486,244 - -0.1 486,249 - +0.4 486,249 - +0.4 486,253 - +0.5 486,253 - -0.2 486,253 - +0.3 486,254 + +0.5 486,254 + +0.2 486,255 - +4.0 486,255 - -1.6 486,256 + -0.7 486,269 - -0.8 486,269 - +0.4 486,270 + +0.5 486,271 - +0.1 486,271 - -0.1 486,272 + +0.2 486,281 - -0.1 486,291 - +0.0 486,292 + -0.1 486,293 - +0.4 486,319 - -0.2 486,346 - +0.4 486,347 + +0.6 486,712 - MMP_RS02595 0.62 +0.5 486,886 - +0.2 486,890 - +4.0 486,929 - +0.9 486,934 - +0.2 486,937 - +0.0 486,937 - +0.7 486,938 + +4.2 486,981 + +0.3 486,987 - +0.2 486,987 - +0.2 486,987 - +0.1 486,987 - +0.4 486,987 - -0.3 486,988 + +1.0 486,988 + -0.3 486,988 + +0.3 486,988 + +0.4 486,988 + +0.3 487,065 - +0.4 487,066 + +0.3 487,072 - +0.2 487,073 + +0.2 487,073 + -0.5 487,083 - -0.2 487,090 - -0.1 487,090 - -0.0 487,090 - +0.3 487,090 - +0.4 487,090 - +0.1 487,091 + -0.3 487,094 - +0.5 487,094 - +0.4 487,095 + +0.6 487,209 - +0.3
Or see this region's nucleotide sequence