Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01090 and MMP_RS01095 overlap by 8 nucleotides MMP_RS01095 and MMP_RS01100 overlap by 1 nucleotides MMP_RS01100 and MMP_RS01105 are separated by 29 nucleotides MMP_RS01105 and MMP_RS01110 are separated by 16 nucleotides
MMP_RS01090: MMP_RS01090 - ABC transporter substrate-binding protein, at 204,032 to 205,093
_RS01090
MMP_RS01095: MMP_RS01095 - iron ABC transporter permease, at 205,086 to 206,036
_RS01095
MMP_RS01100: MMP_RS01100 - ABC transporter ATP-binding protein, at 206,036 to 206,818
_RS01100
MMP_RS01105: MMP_RS01105 - hypothetical protein, at 206,848 to 207,624
_RS01105
MMP_RS01110: MMP_RS01110 - FmdE family protein, at 207,641 to 208,225
_RS01110
Position (kb) 206
207 Strain fitness (log2 ratio) -1
0
1 at 205.051 kb on + strand at 205.054 kb on - strand at 205.155 kb on - strand at 205.155 kb on - strand at 205.174 kb on - strand at 205.319 kb on - strand, within MMP_RS01095 at 205.359 kb on + strand, within MMP_RS01095 at 205.434 kb on - strand, within MMP_RS01095 at 205.443 kb on - strand, within MMP_RS01095 at 205.970 kb on - strand at 206.015 kb on + strand at 206.034 kb on - strand at 206.095 kb on - strand at 206.102 kb on + strand at 206.126 kb on + strand, within MMP_RS01100 at 206.128 kb on + strand, within MMP_RS01100 at 206.761 kb on - strand at 206.803 kb on + strand at 206.948 kb on - strand, within MMP_RS01105 at 207.053 kb on - strand, within MMP_RS01105 at 207.053 kb on - strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.064 kb on + strand, within MMP_RS01105 at 207.365 kb on - strand, within MMP_RS01105 at 207.383 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.652 kb on + strand at 207.817 kb on - strand, within MMP_RS01110
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 205,051 + +0.0 205,054 - +1.1 205,155 - +0.1 205,155 - +0.3 205,174 - -0.2 205,319 - MMP_RS01095 0.25 +0.2 205,359 + MMP_RS01095 0.29 +0.2 205,434 - MMP_RS01095 0.37 +0.5 205,443 - MMP_RS01095 0.38 +0.2 205,970 - -0.2 206,015 + -0.2 206,034 - -0.2 206,095 - +0.7 206,102 + +0.2 206,126 + MMP_RS01100 0.11 +0.9 206,128 + MMP_RS01100 0.12 +0.0 206,761 - -0.7 206,803 + -0.6 206,948 - MMP_RS01105 0.13 +0.4 207,053 - MMP_RS01105 0.26 +0.7 207,053 - MMP_RS01105 0.26 -0.1 207,054 + MMP_RS01105 0.27 +0.6 207,054 + MMP_RS01105 0.27 -0.4 207,054 + MMP_RS01105 0.27 +0.1 207,064 + MMP_RS01105 0.28 -0.8 207,365 - MMP_RS01105 0.67 +0.2 207,383 - MMP_RS01105 0.69 +0.5 207,390 - MMP_RS01105 0.70 +0.1 207,390 - MMP_RS01105 0.70 +0.3 207,652 + +0.3 207,817 - MMP_RS01110 0.30 +0.2
Or see this region's nucleotide sequence