Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11975

Experiment: R2A with m-arsenite 0.0390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with m-arsenite 0.0390625 mM
2,653,452	+		LRK54_RS11970	0.35	-1.9
2,653,452	+		LRK54_RS11970	0.35	-0.8
2,653,453	-		LRK54_RS11970	0.35	-0.2
2,653,453	-		LRK54_RS11970	0.35	+1.0
2,653,453	-		LRK54_RS11970	0.35	-1.1
2,653,453	-		LRK54_RS11970	0.35	+0.2
2,653,482	+		LRK54_RS11970	0.37	-1.5
2,653,482	+		LRK54_RS11970	0.37	-0.8
2,653,482	+		LRK54_RS11970	0.37	-1.9
2,653,482	+		LRK54_RS11970	0.37	-0.8
2,653,482	+		LRK54_RS11970	0.37	+0.8
2,653,482	+		LRK54_RS11970	0.37	+0.1
2,653,482	+		LRK54_RS11970	0.37	-1.5
2,653,482	+		LRK54_RS11970	0.37	-1.1
2,653,482	+		LRK54_RS11970	0.37	-0.3
2,653,482	+		LRK54_RS11970	0.37	-1.4
2,653,482	+		LRK54_RS11970	0.37	-2.2
2,653,482	+		LRK54_RS11970	0.37	-0.8
2,653,482	+		LRK54_RS11970	0.37	-0.9
2,653,482	+		LRK54_RS11970	0.37	+0.4
2,653,482	+		LRK54_RS11970	0.37	+0.4
2,653,482	+		LRK54_RS11970	0.37	+0.2
2,653,482	+		LRK54_RS11970	0.37	-1.2
2,653,482	+		LRK54_RS11970	0.37	-2.0
2,653,482	+		LRK54_RS11970	0.37	-0.4
2,653,482	+		LRK54_RS11970	0.37	+0.9
2,653,482	+		LRK54_RS11970	0.37	+0.0
2,653,482	+		LRK54_RS11970	0.37	+0.4
2,653,482	+		LRK54_RS11970	0.37	+1.2
2,653,482	+		LRK54_RS11970	0.37	-0.6
2,653,482	+		LRK54_RS11970	0.37	-0.1
2,653,482	+		LRK54_RS11970	0.37	-0.2
2,653,482	+		LRK54_RS11970	0.37	+0.6
2,653,482	+		LRK54_RS11970	0.37	-0.6
2,653,482	+		LRK54_RS11970	0.37	-0.1
2,653,483	-		LRK54_RS11970	0.38	-0.0
2,653,483	-		LRK54_RS11970	0.38	-0.2
2,653,483	-		LRK54_RS11970	0.38	-0.3
2,653,483	-		LRK54_RS11970	0.38	-0.4
2,653,483	-		LRK54_RS11970	0.38	+1.3
2,653,483	-		LRK54_RS11970	0.38	+0.7
2,653,483	-		LRK54_RS11970	0.38	+2.2
2,653,483	-		LRK54_RS11970	0.38	-1.5
2,653,483	-		LRK54_RS11970	0.38	-0.8
2,653,483	-		LRK54_RS11970	0.38	-0.1
2,653,483	-		LRK54_RS11970	0.38	-1.7
2,653,483	-		LRK54_RS11970	0.38	-0.9
2,653,483	-		LRK54_RS11970	0.38	+0.8
2,653,483	-		LRK54_RS11970	0.38	+0.7
2,653,485	+		LRK54_RS11970	0.38	-1.0
2,653,485	+		LRK54_RS11970	0.38	-1.0
2,653,485	+		LRK54_RS11970	0.38	-0.5
2,653,485	+		LRK54_RS11970	0.38	-0.6
2,653,485	+		LRK54_RS11970	0.38	-0.4
2,653,485	+		LRK54_RS11970	0.38	-0.4
2,653,486	-		LRK54_RS11970	0.38	+0.2
2,653,486	-		LRK54_RS11970	0.38	-0.1
2,653,486	-		LRK54_RS11970	0.38	+0.7
2,653,486	-		LRK54_RS11970	0.38	-0.4
2,653,486	-		LRK54_RS11970	0.38	+0.1
2,653,486	-		LRK54_RS11970	0.38	+0.2
2,653,486	-		LRK54_RS11970	0.38	-0.5
2,653,486	-		LRK54_RS11970	0.38	-0.4
2,653,486	-		LRK54_RS11970	0.38	-1.3
2,653,486	-		LRK54_RS11970	0.38	+0.6
2,653,486	-		LRK54_RS11970	0.38	-0.1
2,653,486	-		LRK54_RS11970	0.38	-1.5
2,653,725	+		LRK54_RS11970	0.57	-2.5
2,653,726	-		LRK54_RS11970	0.57	-0.3
2,653,932	+		LRK54_RS11970	0.73	-2.6
2,653,932	+		LRK54_RS11970	0.73	-0.1
2,653,932	+		LRK54_RS11970	0.73	-1.3
2,653,932	+		LRK54_RS11970	0.73	-0.6
2,653,932	+		LRK54_RS11970	0.73	-1.6
2,653,932	+		LRK54_RS11970	0.73	+1.5
2,653,932	+		LRK54_RS11970	0.73	-0.0
2,653,932	+		LRK54_RS11970	0.73	-0.8
2,653,932	+		LRK54_RS11970	0.73	-0.2
2,653,932	+		LRK54_RS11970	0.73	-1.9
2,653,932	+		LRK54_RS11970	0.73	-0.9
2,653,933	-		LRK54_RS11970	0.73	-1.0
2,653,933	-		LRK54_RS11970	0.73	-0.4
2,653,933	-		LRK54_RS11970	0.73	-2.1
2,653,933	-		LRK54_RS11970	0.73	+0.2
2,653,933	-		LRK54_RS11970	0.73	-0.4
2,653,933	-		LRK54_RS11970	0.73	-0.2
2,653,933	-		LRK54_RS11970	0.73	-0.6
2,653,933	-		LRK54_RS11970	0.73	-1.0
2,653,933	-		LRK54_RS11970	0.73	-0.2
2,653,933	-		LRK54_RS11970	0.73	-0.7
2,653,933	-		LRK54_RS11970	0.73	-0.5
2,653,933	-		LRK54_RS11970	0.73	-1.0
2,653,933	-		LRK54_RS11970	0.73	-1.6
2,653,933	-		LRK54_RS11970	0.73	-1.2
2,653,933	-		LRK54_RS11970	0.73	-1.4
2,654,238	+				-1.1
2,654,238	+				+1.9
2,654,238	+				+0.7
2,654,239	-				-1.9
2,654,239	-				+0.7
2,654,239	-				+0.6
2,654,239	-				-0.4
2,654,281	+				-1.5
2,654,281	+				+0.9
2,654,281	+				-1.1
2,654,281	+				+0.5
2,654,281	+				+1.2
2,654,281	+				-0.2
2,654,281	+				-1.1
2,654,281	+				+0.1
2,654,281	+				-0.7
2,654,281	+				+0.3
2,654,281	+				-1.4
2,654,281	+				+0.5
2,654,281	+				+0.1
2,654,282	-				+0.2
2,654,282	-				-0.1
2,654,282	-				+1.1
2,654,282	-				-0.1
2,654,282	-				-1.7
2,654,282	-				+0.7
2,654,282	-				-1.2
2,654,282	-				-0.3
2,654,282	-				+0.0
2,654,282	-				+1.0
2,654,282	-				-0.1
2,654,282	-				-0.8
2,654,282	-				+0.1
2,654,287	+				-0.7
2,654,332	+				+0.4
2,654,332	+				-1.9
2,654,333	-				+0.4
2,654,333	-				-0.5
2,654,333	-				+0.5
2,654,333	-				+0.9
2,654,333	-				-0.8
2,654,464	+				+0.6
2,654,554	+				-0.1
2,654,554	+				-0.5
2,654,818	+		LRK54_RS11975	0.24	-1.6
2,654,818	+		LRK54_RS11975	0.24	-1.0
2,654,818	+		LRK54_RS11975	0.24	-1.5
2,654,818	+		LRK54_RS11975	0.24	-1.1
2,654,819	-		LRK54_RS11975	0.24	-0.6
2,654,819	-		LRK54_RS11975	0.24	-0.1
2,654,819	-		LRK54_RS11975	0.24	-1.3
2,654,819	-		LRK54_RS11975	0.24	-3.4
2,654,819	-		LRK54_RS11975	0.24	-1.0
2,654,819	-		LRK54_RS11975	0.24	-1.1
2,654,819	-		LRK54_RS11975	0.24	-2.8
2,654,819	-		LRK54_RS11975	0.24	-1.0
2,654,819	-		LRK54_RS11975	0.24	-0.6
2,655,100	-		LRK54_RS11975	0.39	+0.6
2,655,100	-		LRK54_RS11975	0.39	-1.1
2,655,505	+		LRK54_RS11975	0.61	+0.2
2,655,505	+		LRK54_RS11975	0.61	-0.6
2,655,506	-		LRK54_RS11975	0.62	+0.6
2,655,506	-		LRK54_RS11975	0.62	-1.1
2,655,506	-		LRK54_RS11975	0.62	+0.2
2,655,506	-		LRK54_RS11975	0.62	-1.7
2,655,506	-		LRK54_RS11975	0.62	-1.5
2,655,520	+		LRK54_RS11975	0.62	-1.4
2,655,520	+		LRK54_RS11975	0.62	-1.6
2,655,520	+		LRK54_RS11975	0.62	+0.2
2,655,520	+		LRK54_RS11975	0.62	-1.8
2,655,520	+		LRK54_RS11975	0.62	-0.6
2,655,520	+		LRK54_RS11975	0.62	-3.5
2,655,595	+		LRK54_RS11975	0.66	-1.3
2,655,595	+		LRK54_RS11975	0.66	-0.8
2,655,596	-				+0.6
2,655,596	-		LRK54_RS11975	0.66	-1.3
2,655,596	-		LRK54_RS11975	0.66	-0.8
2,655,596	-		LRK54_RS11975	0.66	-2.0
2,655,596	-		LRK54_RS11975	0.66	-1.1
2,655,596	-		LRK54_RS11975	0.66	-2.8
2,655,596	-		LRK54_RS11975	0.66	+0.2
2,655,596	-				+0.2
2,655,596	-		LRK54_RS11975	0.66	-2.0
2,655,601	+		LRK54_RS11975	0.67	-2.3
2,655,602	-		LRK54_RS11975	0.67	-0.1
2,655,811	-		LRK54_RS11975	0.78	-1.1
2,656,315	-				+0.4
2,656,315	-				+0.6
2,656,315	-				-1.1
2,656,315	-				-0.8
2,656,316	+				-2.5
2,656,316	+				-0.1
2,656,316	+				-0.2
2,656,316	+				-0.5
2,656,316	+				+0.4
2,656,316	+				+0.5
2,656,316	+				+1.9
2,656,317	-				-0.1
2,656,317	-				-0.0
2,656,317	-				+0.2
2,656,317	-				-0.3
2,656,317	-				+2.1
2,656,317	-				-0.4
2,656,317	-				+0.2
2,656,317	-				+1.2
2,656,317	-				+0.6
2,656,317	-				+1.0
2,656,438	+				+0.8
2,656,438	+				-0.6
2,656,438	+				+0.5
2,656,439	-				+0.0
2,656,439	-				+0.8
2,656,449	+				+0.1
2,656,449	+				+0.0
2,656,449	+				-0.4
2,656,449	+				-0.2
2,656,449	+				-0.1
2,656,450	-				-0.1
2,656,450	-				-0.1
2,656,450	-				-0.5
2,656,450	-				-1.1
2,656,450	-				+0.9
2,656,450	-				+0.1
2,656,461	+				-0.4
2,656,461	+				+0.9
2,656,461	+				-0.6
2,656,461	+				+0.6
2,656,462	-				+0.0
2,656,462	-				+0.2
2,656,509	+				+0.3
2,656,509	+				+0.0
2,656,614	+		LRK54_RS11980	0.20	+0.1
2,656,614	+		LRK54_RS11980	0.20	-1.0
2,656,614	+		LRK54_RS11980	0.20	-0.2
2,656,614	+		LRK54_RS11980	0.20	+0.1
2,656,614	+		LRK54_RS11980	0.20	-0.0
2,656,614	+		LRK54_RS11980	0.20	+0.5
2,656,614	+		LRK54_RS11980	0.20	+1.2
2,656,614	+		LRK54_RS11980	0.20	-1.3
2,656,614	+		LRK54_RS11980	0.20	+1.2
2,656,614	+		LRK54_RS11980	0.20	+1.7
2,656,614	+		LRK54_RS11980	0.20	-0.1
2,656,615	-		LRK54_RS11980	0.20	-0.7
2,656,615	-		LRK54_RS11980	0.20	+1.2
2,656,615	-		LRK54_RS11980	0.20	-0.2
2,656,615	-		LRK54_RS11980	0.20	+1.3
2,656,615	-		LRK54_RS11980	0.20	-0.1
2,656,615	-		LRK54_RS11980	0.20	+0.7
2,656,677	+		LRK54_RS11980	0.38	+1.6
2,656,677	+		LRK54_RS11980	0.38	-0.3
2,656,677	+		LRK54_RS11980	0.38	-0.2
2,656,677	+		LRK54_RS11980	0.38	+0.7
2,656,677	+		LRK54_RS11980	0.38	-1.1
2,656,678	-		LRK54_RS11980	0.38	+0.2
2,656,678	-		LRK54_RS11980	0.38	-0.1
2,656,678	-		LRK54_RS11980	0.38	-0.7
2,656,755	+		LRK54_RS11980	0.60	+0.2
2,656,755	+		LRK54_RS11980	0.60	+1.0
2,656,755	+		LRK54_RS11980	0.60	+0.7
2,656,755	+		LRK54_RS11980	0.60	-0.7
2,656,755	+		LRK54_RS11980	0.60	-0.4
2,656,755	+		LRK54_RS11980	0.60	+0.9
2,656,756	-		LRK54_RS11980	0.61	+0.7
2,656,756	-		LRK54_RS11980	0.61	-0.2
2,656,756	-		LRK54_RS11980	0.61	-0.5
2,656,795	-		LRK54_RS11980	0.72	+0.5
2,656,912	+				+1.2
2,656,912	+				-0.8
2,656,920	-				+2.8
2,657,036	+				-1.5
2,657,036	+				+0.1
2,657,036	+				+0.3
2,657,036	+				+1.6
2,657,037	-				-0.6
2,657,037	-				-1.1
2,657,037	-				-0.8
2,657,081	+				+1.2
2,657,081	+				+1.2
2,657,081	+				+0.5
2,657,082	-				-1.3
2,657,082	-				+0.5
2,657,082	-				+0.6
2,657,082	-				+0.6
2,657,166	-		LRK54_RS11985	0.14	-0.1