Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09945

Experiment: R2A with m-arsenite 0.0390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with m-arsenite 0.0390625 mM
2,183,328	+		LRK54_RS09935	0.88	+1.3
2,183,340	+		LRK54_RS09935	0.89	+0.3
2,183,356	+				+0.3
2,183,356	+				-0.5
2,183,356	+				+0.1
2,183,356	+				-0.6
2,183,356	+				+0.5
2,183,357	-				+0.3
2,183,357	-				+1.5
2,183,357	-				+0.6
2,183,457	+				+0.0
2,183,457	+				+0.8
2,183,457	+				+0.6
2,183,457	+				+0.8
2,183,457	+				+1.5
2,183,457	+				-1.3
2,183,457	+				-0.2
2,183,457	+				+1.4
2,183,457	+				+1.0
2,183,458	-				+0.9
2,183,458	-				+1.1
2,183,458	-				+0.8
2,183,458	-				-0.1
2,183,458	-				+0.1
2,183,458	-				-2.0
2,183,465	+				+0.5
2,183,465	+				-0.1
2,183,465	+				+1.5
2,183,465	+				+0.1
2,183,465	+				-0.1
2,183,465	+				+0.1
2,183,465	+				+0.0
2,183,465	+				-0.6
2,183,465	+				+0.2
2,183,465	+				-0.2
2,183,465	+				+0.6
2,183,465	+				+1.3
2,183,466	-				-0.3
2,183,466	-				-0.1
2,183,466	-				-0.4
2,183,466	-				-0.2
2,183,466	-				-0.7
2,183,466	-				+0.1
2,183,466	-				-2.7
2,183,466	-				+1.8
2,183,466	-				+0.7
2,183,466	-				+0.8
2,183,466	-				+0.8
2,183,466	-				+0.0
2,183,466	-				-0.0
2,183,466	-				-0.2
2,183,466	-				-0.9
2,183,466	-				-0.1
2,183,610	+				+0.1
2,183,610	+				+2.3
2,183,610	+				+0.3
2,183,611	-				+0.4
2,183,712	+		LRK54_RS09940	0.24	+0.3
2,183,713	-		LRK54_RS09940	0.25	-0.8
2,183,713	-		LRK54_RS09940	0.25	+0.2
2,183,721	+		LRK54_RS09940	0.26	-0.7
2,183,721	+		LRK54_RS09940	0.26	+0.1
2,183,721	+		LRK54_RS09940	0.26	+0.7
2,183,721	+		LRK54_RS09940	0.26	+0.7
2,183,721	+		LRK54_RS09940	0.26	+0.0
2,183,721	+		LRK54_RS09940	0.26	+1.4
2,183,721	+		LRK54_RS09940	0.26	-0.3
2,183,721	+		LRK54_RS09940	0.26	+0.3
2,183,721	+		LRK54_RS09940	0.26	-0.5
2,183,721	+		LRK54_RS09940	0.26	+0.7
2,183,721	+		LRK54_RS09940	0.26	-0.4
2,183,721	+		LRK54_RS09940	0.26	+0.4
2,183,721	+		LRK54_RS09940	0.26	-1.1
2,183,721	+		LRK54_RS09940	0.26	+0.1
2,183,721	+		LRK54_RS09940	0.26	+2.3
2,183,721	+		LRK54_RS09940	0.26	+0.3
2,183,721	+		LRK54_RS09940	0.26	-0.1
2,183,722	-		LRK54_RS09940	0.26	+1.0
2,183,722	-		LRK54_RS09940	0.26	+0.1
2,183,722	-		LRK54_RS09940	0.26	+0.7
2,183,722	-		LRK54_RS09940	0.26	+1.0
2,183,722	-		LRK54_RS09940	0.26	-0.7
2,183,722	-		LRK54_RS09940	0.26	-1.2
2,183,722	-		LRK54_RS09940	0.26	+1.5
2,183,722	-		LRK54_RS09940	0.26	+1.6
2,183,722	-		LRK54_RS09940	0.26	-0.1
2,183,722	-		LRK54_RS09940	0.26	-0.3
2,183,722	-		LRK54_RS09940	0.26	+1.1
2,183,722	-		LRK54_RS09940	0.26	-1.6
2,183,722	-		LRK54_RS09940	0.26	+0.8
2,183,722	-		LRK54_RS09940	0.26	+1.0
2,183,722	-		LRK54_RS09940	0.26	-0.9
2,183,722	-		LRK54_RS09940	0.26	-0.9
2,183,722	-		LRK54_RS09940	0.26	-1.1
2,183,722	-		LRK54_RS09940	0.26	-1.3
2,183,722	-		LRK54_RS09940	0.26	+0.4
2,183,722	-		LRK54_RS09940	0.26	+0.0
2,183,722	-		LRK54_RS09940	0.26	+0.7
2,183,722	-		LRK54_RS09940	0.26	-0.7
2,183,722	-		LRK54_RS09940	0.26	-0.6
2,183,727	+		LRK54_RS09940	0.27	-0.2
2,183,727	+		LRK54_RS09940	0.27	+1.4
2,183,727	+		LRK54_RS09940	0.27	-0.6
2,183,727	+		LRK54_RS09940	0.27	+1.8
2,183,728	-		LRK54_RS09940	0.27	-0.2
2,183,728	-		LRK54_RS09940	0.27	+0.4
2,183,728	-		LRK54_RS09940	0.27	-1.3
2,183,728	-		LRK54_RS09940	0.27	-0.3
2,183,728	-		LRK54_RS09940	0.27	-1.3
2,183,728	-		LRK54_RS09940	0.27	+0.6
2,183,728	-		LRK54_RS09940	0.27	-0.3
2,183,728	-		LRK54_RS09940	0.27	-2.3
2,183,913	+		LRK54_RS09940	0.55	+0.7
2,183,913	+		LRK54_RS09940	0.55	+0.3
2,183,913	+		LRK54_RS09940	0.55	+1.2
2,183,913	+		LRK54_RS09940	0.55	+0.7
2,183,914	-		LRK54_RS09940	0.55	-0.1
2,183,914	-		LRK54_RS09940	0.55	-1.4
2,184,017	+		LRK54_RS09940	0.70	+0.6
2,184,033	+		LRK54_RS09940	0.73	-0.9
2,184,033	+		LRK54_RS09940	0.73	+0.5
2,184,033	+		LRK54_RS09940	0.73	+0.4
2,184,033	+		LRK54_RS09940	0.73	+0.3
2,184,033	+		LRK54_RS09940	0.73	-0.2
2,184,033	+		LRK54_RS09940	0.73	+0.2
2,184,033	+		LRK54_RS09940	0.73	+1.1
2,184,033	+		LRK54_RS09940	0.73	+0.1
2,184,033	+		LRK54_RS09940	0.73	+0.7
2,184,033	+		LRK54_RS09940	0.73	+0.3
2,184,033	+		LRK54_RS09940	0.73	-1.5
2,184,033	+		LRK54_RS09940	0.73	-0.0
2,184,033	+		LRK54_RS09940	0.73	+0.5
2,184,033	+		LRK54_RS09940	0.73	+0.3
2,184,034	-		LRK54_RS09940	0.73	-0.6
2,184,034	-		LRK54_RS09940	0.73	-0.3
2,184,034	-		LRK54_RS09940	0.73	-1.4
2,184,109	-		LRK54_RS09940	0.84	+0.7
2,184,219	+				+0.5
2,184,220	-				-0.7
2,184,220	-				+0.1
2,184,321	+				-3.3
2,184,322	-				-1.4
2,184,619	+		LRK54_RS09945	0.35	-2.1
2,184,619	+		LRK54_RS09945	0.35	-0.3
2,184,620	-		LRK54_RS09945	0.35	-2.3
2,184,620	-		LRK54_RS09945	0.35	-0.1
2,184,620	-		LRK54_RS09945	0.35	-0.9
2,184,661	+		LRK54_RS09945	0.40	+0.3
2,184,661	+		LRK54_RS09945	0.40	-2.1
2,184,661	+		LRK54_RS09945	0.40	+0.7
2,184,661	+		LRK54_RS09945	0.40	-1.8
2,184,661	+		LRK54_RS09945	0.40	-1.4
2,184,661	+		LRK54_RS09945	0.40	-0.2
2,184,662	-		LRK54_RS09945	0.40	-1.1
2,184,662	-		LRK54_RS09945	0.40	-1.4
2,184,755	-		LRK54_RS09945	0.50	-1.3
2,184,985	+		LRK54_RS09945	0.74	-2.1
2,184,985	+		LRK54_RS09945	0.74	+0.3
2,184,985	+		LRK54_RS09945	0.74	-0.6
2,184,986	-		LRK54_RS09945	0.74	-2.1
2,184,986	-		LRK54_RS09945	0.74	-1.2
2,184,986	-		LRK54_RS09945	0.74	-2.2
2,184,986	-		LRK54_RS09945	0.74	+0.1
2,184,986	-		LRK54_RS09945	0.74	-0.9
2,185,000	+		LRK54_RS09945	0.76	-0.1
2,185,000	+		LRK54_RS09945	0.76	-0.6
2,185,000	+		LRK54_RS09945	0.76	-1.9
2,185,001	-		LRK54_RS09945	0.76	+0.7
2,185,001	-		LRK54_RS09945	0.76	-1.1
2,185,001	-		LRK54_RS09945	0.76	-0.6
2,185,001	-		LRK54_RS09945	0.76	+0.0
2,185,001	-		LRK54_RS09945	0.76	-0.7
2,185,147	+				-0.1
2,185,147	+				-0.7
2,185,147	+				-2.3
2,185,147	+				-0.7
2,185,147	+				-1.1
2,185,148	-				+0.3
2,185,148	-				-2.0
2,185,148	-				-1.2
2,185,181	+				-0.9
2,185,181	+				-0.3
2,185,262	+				-0.7
2,185,262	+				+0.0
2,185,337	+		LRK54_RS09950	0.18	-1.0
2,185,337	+		LRK54_RS09950	0.18	+0.2
2,185,337	+		LRK54_RS09950	0.18	-0.1
2,185,337	+		LRK54_RS09950	0.18	+0.5
2,185,338	-		LRK54_RS09950	0.19	-0.8
2,185,338	-		LRK54_RS09950	0.19	+0.6
2,185,338	-		LRK54_RS09950	0.19	-0.9
2,185,445	+		LRK54_RS09950	0.39	-0.8
2,185,445	+		LRK54_RS09950	0.39	-1.6
2,185,445	+		LRK54_RS09950	0.39	-0.4
2,185,445	+		LRK54_RS09950	0.39	-0.4
2,185,445	+		LRK54_RS09950	0.39	-0.4
2,185,446	-		LRK54_RS09950	0.39	+0.6
2,185,446	-		LRK54_RS09950	0.39	-2.6
2,185,446	-		LRK54_RS09950	0.39	+0.4
2,185,446	-		LRK54_RS09950	0.39	+0.1
2,185,446	-		LRK54_RS09950	0.39	-0.6
2,185,446	-		LRK54_RS09950	0.39	+0.0
2,185,446	-		LRK54_RS09950	0.39	+0.9
2,185,446	-		LRK54_RS09950	0.39	-0.4
2,185,446	-		LRK54_RS09950	0.39	+1.0
2,185,570	-		LRK54_RS09950	0.62	-0.7
2,185,773	-				-0.7
2,185,773	-				+0.5
2,185,826	-				+0.4
2,185,940	+		LRK54_RS09955	0.13	-1.6
2,185,940	+		LRK54_RS09955	0.13	+0.2
2,185,940	+		LRK54_RS09955	0.13	+1.6
2,185,940	+		LRK54_RS09955	0.13	+0.3
2,185,940	+		LRK54_RS09955	0.13	+0.9
2,185,941	-		LRK54_RS09955	0.14	+0.4
2,185,941	-		LRK54_RS09955	0.14	+0.4
2,185,941	-		LRK54_RS09955	0.14	+0.6
2,185,941	-		LRK54_RS09955	0.14	-0.0
2,185,941	-		LRK54_RS09955	0.14	-0.1
2,185,941	-		LRK54_RS09955	0.14	+1.0
2,185,997	+		LRK54_RS09955	0.21	-2.0
2,186,123	+		LRK54_RS09955	0.37	+0.3
2,186,123	+		LRK54_RS09955	0.37	-1.3
2,186,123	+		LRK54_RS09955	0.37	+0.1
2,186,123	+		LRK54_RS09955	0.37	+1.5
2,186,123	+		LRK54_RS09955	0.37	-0.7
2,186,124	-		LRK54_RS09955	0.37	-0.3
2,186,124	-		LRK54_RS09955	0.37	-0.1
2,186,124	-		LRK54_RS09955	0.37	+0.7