Experiment: R2A with m-arsenite 0.0390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04885 and LRK54_RS04890 are separated by 13 nucleotides LRK54_RS04890 and LRK54_RS04895 are separated by 18 nucleotides LRK54_RS04895 and LRK54_RS04900 overlap by 8 nucleotides
LRK54_RS04885: LRK54_RS04885 - protein TolR, at 1,036,416 to 1,036,880
_RS04885
LRK54_RS04890: LRK54_RS04890 - protein TolQ, at 1,036,894 to 1,037,580
_RS04890
LRK54_RS04895: LRK54_RS04895 - tol-pal system-associated acyl-CoA thioesterase, at 1,037,599 to 1,038,036
_RS04895
LRK54_RS04900: LRK54_RS04900 - Holliday junction branch migration DNA helicase RuvB, at 1,038,029 to 1,039,078
_RS04900
Position (kb)
1037
1038
1039 Strain fitness (log2 ratio)
-2
-1
0
1 at 1037.755 kb on - strand, within LRK54_RS04895 at 1037.755 kb on - strand, within LRK54_RS04895 at 1037.755 kb on - strand, within LRK54_RS04895 at 1037.942 kb on + strand, within LRK54_RS04895 at 1037.954 kb on + strand, within LRK54_RS04895 at 1037.954 kb on + strand, within LRK54_RS04895 at 1037.954 kb on + strand, within LRK54_RS04895 at 1037.954 kb on + strand, within LRK54_RS04895 at 1037.954 kb on + strand, within LRK54_RS04895 at 1037.955 kb on - strand, within LRK54_RS04895 at 1037.955 kb on - strand, within LRK54_RS04895 at 1037.955 kb on - strand, within LRK54_RS04895 at 1037.955 kb on - strand, within LRK54_RS04895 at 1037.955 kb on - strand, within LRK54_RS04895 at 1037.987 kb on + strand, within LRK54_RS04895 at 1037.987 kb on + strand, within LRK54_RS04895 at 1037.987 kb on + strand, within LRK54_RS04895 at 1037.987 kb on + strand, within LRK54_RS04895 at 1037.988 kb on - strand, within LRK54_RS04895 at 1037.988 kb on - strand, within LRK54_RS04895 at 1037.995 kb on + strand at 1037.995 kb on + strand at 1037.995 kb on + strand at 1037.995 kb on + strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1037.996 kb on - strand at 1038.532 kb on - strand, within LRK54_RS04900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.0390625 mM remove 1,037,755 - LRK54_RS04895 0.36 -2.4 1,037,755 - LRK54_RS04895 0.36 -0.8 1,037,755 - LRK54_RS04895 0.36 +0.1 1,037,942 + LRK54_RS04895 0.78 -1.7 1,037,954 + LRK54_RS04895 0.81 -0.6 1,037,954 + LRK54_RS04895 0.81 -0.1 1,037,954 + LRK54_RS04895 0.81 -0.5 1,037,954 + LRK54_RS04895 0.81 -2.1 1,037,954 + LRK54_RS04895 0.81 -1.7 1,037,955 - LRK54_RS04895 0.81 -1.4 1,037,955 - LRK54_RS04895 0.81 -0.7 1,037,955 - LRK54_RS04895 0.81 -0.3 1,037,955 - LRK54_RS04895 0.81 -0.7 1,037,955 - LRK54_RS04895 0.81 -0.9 1,037,987 + LRK54_RS04895 0.89 -1.3 1,037,987 + LRK54_RS04895 0.89 +0.4 1,037,987 + LRK54_RS04895 0.89 -1.7 1,037,987 + LRK54_RS04895 0.89 -0.5 1,037,988 - LRK54_RS04895 0.89 -0.7 1,037,988 - LRK54_RS04895 0.89 +1.0 1,037,995 + -1.4 1,037,995 + -0.6 1,037,995 + -0.2 1,037,995 + -2.7 1,037,996 - -1.9 1,037,996 - -0.1 1,037,996 - -1.3 1,037,996 - -0.7 1,037,996 - -1.0 1,037,996 - -0.6 1,037,996 - -0.2 1,037,996 - +0.5 1,037,996 - -2.0 1,037,996 - -0.9 1,037,996 - -1.7 1,037,996 - +0.0 1,037,996 - -1.0 1,038,532 - LRK54_RS04900 0.48 +1.7
Or see this region's nucleotide sequence