Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23990

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
5,846,967	-				-0.4
5,847,171	-		CA265_RS23985	0.30	+0.9
5,847,258	+		CA265_RS23985	0.38	+0.5
5,847,270	-		CA265_RS23985	0.39	+0.6
5,847,308	-		CA265_RS23985	0.43	+1.4
5,847,319	-		CA265_RS23985	0.44	+0.1
5,847,332	+		CA265_RS23985	0.45	+0.3
5,847,334	+		CA265_RS23985	0.45	+0.7
5,847,334	+		CA265_RS23985	0.45	+0.9
5,847,335	-		CA265_RS23985	0.45	+1.0
5,847,335	-		CA265_RS23985	0.45	+0.7
5,847,362	-		CA265_RS23985	0.48	+0.5
5,847,362	-		CA265_RS23985	0.48	-0.0
5,847,364	-		CA265_RS23985	0.48	-0.1
5,847,364	-		CA265_RS23985	0.48	-0.3
5,847,383	+		CA265_RS23985	0.50	+0.1
5,847,521	-		CA265_RS23985	0.63	-1.4
5,847,521	-		CA265_RS23985	0.63	+0.8
5,847,567	+		CA265_RS23985	0.68	-0.4
5,847,567	+		CA265_RS23985	0.68	+0.3
5,847,568	-		CA265_RS23985	0.68	-0.5
5,847,588	+		CA265_RS23985	0.70	+1.2
5,847,611	-		CA265_RS23985	0.72	-0.1
5,847,628	-		CA265_RS23985	0.74	+0.2
5,847,655	+		CA265_RS23985	0.76	-0.3
5,847,655	+		CA265_RS23985	0.76	-1.3
5,847,681	-		CA265_RS23985	0.79	+0.1
5,847,726	+		CA265_RS23985	0.83	+0.7
5,847,736	-		CA265_RS23985	0.84	+0.1
5,847,793	-		CA265_RS23985	0.90	+1.1
5,847,793	-		CA265_RS23985	0.90	+0.3
5,847,800	+				+0.6
5,847,803	+				+0.4
5,847,803	+				+0.3
5,847,803	+				+1.1
5,847,868	+				+1.2
5,847,892	+				+1.6
5,847,892	+				+0.1
5,847,892	+				+0.3
5,847,893	-				+1.0
5,847,913	-				-0.4
5,847,917	-				-0.1
5,847,925	-				+0.2
5,847,926	+				-0.1
5,847,927	-				-0.7
5,847,952	+				-1.3
5,848,016	+		CA265_RS23990	0.13	-0.5
5,848,021	+		CA265_RS23990	0.13	-0.8
5,848,085	-		CA265_RS23990	0.23	-0.6
5,848,172	-		CA265_RS23990	0.35	+0.1
5,848,192	+		CA265_RS23990	0.38	-0.8
5,848,192	+		CA265_RS23990	0.38	+0.1
5,848,193	-		CA265_RS23990	0.38	-1.6
5,848,218	-		CA265_RS23990	0.42	+0.1
5,848,411	+		CA265_RS23990	0.70	-0.2
5,848,427	+		CA265_RS23990	0.73	-1.7
5,848,434	+		CA265_RS23990	0.74	-1.2
5,848,652	+				+0.6