Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23705

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
5,787,829	-		CA265_RS23700	0.26	+1.4
5,787,927	+		CA265_RS23700	0.35	-0.9
5,787,927	+		CA265_RS23700	0.35	+0.8
5,787,985	-		CA265_RS23700	0.41	-0.5
5,788,046	+		CA265_RS23700	0.46	-0.5
5,788,046	+		CA265_RS23700	0.46	-0.5
5,788,167	+		CA265_RS23700	0.57	+0.8
5,788,168	-		CA265_RS23700	0.57	+1.2
5,788,206	+		CA265_RS23700	0.61	-0.2
5,788,209	-		CA265_RS23700	0.61	-0.1
5,788,226	+		CA265_RS23700	0.63	-0.4
5,788,337	-		CA265_RS23700	0.73	+0.8
5,788,459	+		CA265_RS23700	0.84	-0.1
5,788,498	+		CA265_RS23700	0.87	-0.1
5,788,516	+		CA265_RS23700	0.89	+0.3
5,788,615	+				-0.2
5,788,823	-				-0.2
5,788,826	+				+0.2
5,788,965	+		CA265_RS23705	0.20	+0.6
5,789,070	-		CA265_RS23705	0.35	+0.9
5,789,121	+		CA265_RS23705	0.42	+0.2
5,789,157	+		CA265_RS23705	0.47	+1.3
5,789,252	+		CA265_RS23705	0.60	-0.2
5,789,277	+		CA265_RS23705	0.64	+0.4
5,789,310	-		CA265_RS23705	0.69	-1.1
5,789,317	+		CA265_RS23705	0.69	-0.5
5,789,317	+		CA265_RS23705	0.69	+1.2
5,789,367	+		CA265_RS23705	0.77	+1.0
5,789,368	-		CA265_RS23705	0.77	-1.4
5,789,451	+		CA265_RS23705	0.88	+1.2
5,789,452	-		CA265_RS23705	0.89	+1.2
5,789,514	+				+0.4
5,789,557	-				-1.7
5,789,587	-				-0.8
5,789,644	-				-0.9
5,789,723	-				-1.1
5,789,783	+				-0.3
5,789,801	+		CA265_RS23710	0.10	+0.6
5,789,805	+		CA265_RS23710	0.11	-1.1
5,789,805	+		CA265_RS23710	0.11	-0.2
5,789,806	-		CA265_RS23710	0.11	-0.7
5,789,809	+		CA265_RS23710	0.11	-0.1
5,789,810	-		CA265_RS23710	0.12	-0.8
5,789,810	-		CA265_RS23710	0.12	-1.1
5,789,810	-		CA265_RS23710	0.12	-0.1
5,789,858	+		CA265_RS23710	0.17	+0.0
5,789,903	+		CA265_RS23710	0.23	+0.1
5,789,904	-		CA265_RS23710	0.23	-1.2
5,789,940	-		CA265_RS23710	0.28	-0.4
5,789,983	+		CA265_RS23710	0.33	+0.8
5,789,984	-		CA265_RS23710	0.33	-0.5
5,789,984	-		CA265_RS23710	0.33	-0.7
5,790,036	-		CA265_RS23710	0.39	-1.0
5,790,038	-		CA265_RS23710	0.40	-0.8
5,790,065	+		CA265_RS23710	0.43	+0.1
5,790,076	-		CA265_RS23710	0.44	-1.2
5,790,141	-		CA265_RS23710	0.52	+0.2
5,790,261	+		CA265_RS23710	0.67	-0.3
5,790,262	-		CA265_RS23710	0.67	+0.7
5,790,283	-		CA265_RS23710	0.70	+0.2
5,790,358	-		CA265_RS23710	0.79	+0.6
5,790,392	+		CA265_RS23710	0.83	+1.7
5,790,420	+		CA265_RS23710	0.87	+0.8
5,790,442	+		CA265_RS23710	0.89	+0.1
5,790,442	+		CA265_RS23710	0.89	+0.6