Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23190

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
5,673,127	+		CA265_RS23185	0.69	-0.3
5,673,128	-		CA265_RS23185	0.69	+1.0
5,673,158	+		CA265_RS23185	0.71	+0.3
5,673,158	+		CA265_RS23185	0.71	-1.8
5,673,159	-		CA265_RS23185	0.71	+0.1
5,673,159	-		CA265_RS23185	0.71	-0.0
5,673,159	-		CA265_RS23185	0.71	-0.4
5,673,161	-		CA265_RS23185	0.71	-0.9
5,673,161	-		CA265_RS23185	0.71	+1.3
5,673,283	-		CA265_RS23185	0.78	+1.7
5,673,322	+		CA265_RS23185	0.80	+0.7
5,673,323	-		CA265_RS23185	0.80	-2.1
5,673,414	-		CA265_RS23185	0.85	+0.4
5,673,417	+		CA265_RS23185	0.85	+0.1
5,673,427	-		CA265_RS23185	0.85	+0.4
5,673,542	+				+0.3
5,673,543	-				-0.5
5,673,602	+				-0.4
5,673,603	-				+0.5
5,673,604	+				+0.7
5,673,604	+				+0.1
5,673,604	+				+0.2
5,673,605	-				+1.5
5,673,614	+				-0.6
5,673,631	+				+0.5
5,673,631	+				-0.4
5,673,631	+				-1.1
5,673,683	+				+0.0
5,673,732	+				+2.3
5,673,733	-				-0.0
5,673,757	-				+0.5
5,673,757	-				+1.2
5,673,794	+				-1.3
5,673,794	+				-0.6
5,673,794	+				+0.1
5,673,798	+				-1.1
5,673,875	+				+0.1
5,673,908	+				+0.5
5,673,970	-				-0.2
5,673,999	+				-0.9
5,673,999	+				+0.4
5,674,000	-				-0.3
5,674,012	-				-1.4
5,674,012	-				-1.2
5,674,014	-				-0.1
5,674,076	+				+0.7
5,674,077	-				+1.7
5,674,105	-				-0.9
5,674,150	-		CA265_RS23190	0.19	-0.3
5,674,153	+		CA265_RS23190	0.19	-1.5
5,674,264	+		CA265_RS23190	0.43	+0.0
5,674,298	-		CA265_RS23190	0.50	+0.3
5,674,374	-		CA265_RS23190	0.66	-0.1
5,674,456	+		CA265_RS23190	0.83	-0.3
5,674,457	-		CA265_RS23190	0.84	-0.8
5,674,524	+				-0.2
5,674,524	+				+0.3
5,674,532	+				-1.5
5,674,537	+				-0.5
5,674,537	+				+0.2
5,674,538	-				-0.5
5,674,560	+				+0.1
5,674,560	+				+0.2
5,674,560	+				-0.8
5,674,593	+				-0.3
5,674,594	-				-0.4
5,674,601	-				+1.5
5,674,615	-				+0.4
5,674,621	+				-0.5
5,674,689	+		CA265_RS23195	0.17	+0.2
5,674,690	-		CA265_RS23195	0.17	-1.0
5,674,702	+		CA265_RS23195	0.20	+0.2
5,674,703	-		CA265_RS23195	0.20	-0.9
5,674,788	+		CA265_RS23195	0.41	-0.6
5,674,788	+		CA265_RS23195	0.41	-0.8
5,674,788	+		CA265_RS23195	0.41	+0.1
5,674,788	+		CA265_RS23195	0.41	-1.2
5,674,898	+		CA265_RS23195	0.69	+0.6
5,674,899	-		CA265_RS23195	0.69	-0.6
5,674,899	-		CA265_RS23195	0.69	-0.1
5,674,899	-		CA265_RS23195	0.69	+0.3
5,674,899	-		CA265_RS23195	0.69	+0.3
5,674,899	-		CA265_RS23195	0.69	-0.1
5,674,944	-		CA265_RS23195	0.80	-0.8
5,675,019	+				-0.7
5,675,100	-				-0.3
5,675,106	+				+0.7
5,675,112	+				-0.1
5,675,194	+		CA265_RS23200	0.13	+1.0
5,675,195	-		CA265_RS23200	0.13	+1.0
5,675,212	+		CA265_RS23200	0.15	-1.1
5,675,213	-		CA265_RS23200	0.16	+0.3
5,675,213	-		CA265_RS23200	0.16	-1.3
5,675,246	+		CA265_RS23200	0.19	+0.1
5,675,247	-		CA265_RS23200	0.20	-1.0
5,675,247	-		CA265_RS23200	0.20	-0.7
5,675,343	-		CA265_RS23200	0.31	+0.4
5,675,344	+		CA265_RS23200	0.31	-0.2
5,675,348	+		CA265_RS23200	0.31	+0.2
5,675,352	+		CA265_RS23200	0.32	-0.4
5,675,353	-		CA265_RS23200	0.32	-0.1
5,675,380	+		CA265_RS23200	0.35	-0.1
5,675,380	+		CA265_RS23200	0.35	+0.2
5,675,380	+		CA265_RS23200	0.35	-0.3
5,675,388	-				-0.6
5,675,411	-		CA265_RS23200	0.39	-1.9
5,675,437	+		CA265_RS23200	0.42	-0.1
5,675,438	-		CA265_RS23200	0.42	-1.3
5,675,450	-		CA265_RS23200	0.43	-0.6
5,675,508	-		CA265_RS23200	0.50	+1.0