Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22890

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
5,606,331	+				-0.3
5,606,406	+				-0.9
5,606,406	+				+0.2
5,606,406	+				-0.6
5,606,430	-				+0.2
5,606,490	+		CA265_RS22885	0.11	-0.4
5,606,504	-		CA265_RS22885	0.14	-1.0
5,606,512	-		CA265_RS22885	0.16	+1.6
5,606,581	+		CA265_RS22885	0.32	-0.2
5,606,668	+		CA265_RS22885	0.51	+0.0
5,606,696	-		CA265_RS22885	0.57	+0.0
5,606,728	+		CA265_RS22885	0.65	-0.0
5,606,729	-		CA265_RS22885	0.65	+0.9
5,606,846	-				+0.5
5,606,846	-				+0.8
5,606,883	-				+0.9
5,606,940	-				-0.9
5,606,942	-				+0.9
5,606,984	-				+0.4
5,607,021	-				-0.4
5,607,047	+				-1.2
5,607,047	+				+0.7
5,607,047	+				-0.2
5,607,048	-				-0.1
5,607,048	-				+0.4
5,607,051	+				-0.7
5,607,051	+				+0.4
5,607,051	+				-0.0
5,607,051	+				-0.2
5,607,052	-				+0.5
5,607,052	-				+0.3
5,607,070	-				-0.6
5,607,132	+				-0.4
5,607,206	+				-0.1
5,607,213	+				+0.0
5,607,303	-				+0.3
5,607,441	-		CA265_RS22890	0.15	-0.6
5,607,588	+		CA265_RS22890	0.25	+0.8
5,607,605	-		CA265_RS22890	0.26	+0.9
5,607,676	+		CA265_RS22890	0.31	-0.4
5,607,794	+		CA265_RS22890	0.40	+1.8
5,607,795	-		CA265_RS22890	0.40	-0.2
5,607,878	-		CA265_RS22890	0.46	-2.6
5,607,878	-		CA265_RS22890	0.46	-0.8
5,607,878	-		CA265_RS22890	0.46	-1.1
5,607,956	+		CA265_RS22890	0.51	+0.4
5,607,956	+		CA265_RS22890	0.51	-1.5
5,608,181	-		CA265_RS22890	0.67	-1.0
5,608,247	-		CA265_RS22890	0.72	+0.4
5,608,262	+		CA265_RS22890	0.73	-1.6
5,608,347	-		CA265_RS22890	0.79	-2.6
5,608,357	+		CA265_RS22890	0.80	-0.7
5,608,450	+		CA265_RS22890	0.87	+0.1
5,608,645	+				+1.4
5,608,678	-				-0.7
5,608,683	+				-0.2
5,608,695	+				+0.3
5,608,906	+		CA265_RS22895	0.37	-1.2
5,608,907	-		CA265_RS22895	0.37	-0.2
5,608,940	+		CA265_RS22895	0.42	-0.2
5,608,983	-		CA265_RS22895	0.50	-0.8
5,609,073	-		CA265_RS22895	0.65	+0.0
5,609,087	-		CA265_RS22895	0.67	-2.1
5,609,152	-		CA265_RS22895	0.78	+1.0
5,609,163	+		CA265_RS22895	0.80	-2.1
5,609,187	-		CA265_RS22895	0.84	+0.3
5,609,202	-		CA265_RS22895	0.86	+0.4
5,609,272	-				-0.4
5,609,363	+				+0.7
5,609,364	-				-0.2
5,609,368	-				-0.6
5,609,368	-				-0.1
5,609,370	-				+0.2
5,609,407	-				-0.0
5,609,629	-		CA265_RS22900	0.14	+0.2