Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22450

Experiment: R2A with Neomycin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Neomycin 0.004 mg/ml
5,506,770	+				+0.1
5,506,770	+				-0.9
5,506,771	-				+0.3
5,506,834	+				-0.1
5,506,849	+				+0.2
5,506,849	+				+0.8
5,506,850	-				-1.3
5,506,850	-				-0.1
5,506,854	-				-0.6
5,507,043	-		CA265_RS22445	0.15	+0.0
5,507,094	+		CA265_RS22445	0.21	+0.1
5,507,094	+		CA265_RS22445	0.21	+0.3
5,507,118	-		CA265_RS22445	0.24	+2.4
5,507,283	+		CA265_RS22445	0.44	+0.5
5,507,283	+		CA265_RS22445	0.44	+0.5
5,507,305	-		CA265_RS22445	0.46	-0.5
5,507,346	-		CA265_RS22445	0.51	-0.3
5,507,356	+		CA265_RS22445	0.52	+0.7
5,507,357	-		CA265_RS22445	0.52	-0.2
5,507,358	+		CA265_RS22445	0.53	-0.2
5,507,358	+		CA265_RS22445	0.53	+0.2
5,507,359	-		CA265_RS22445	0.53	+0.5
5,507,359	-		CA265_RS22445	0.53	+0.2
5,507,371	-		CA265_RS22445	0.54	+0.1
5,507,371	-		CA265_RS22445	0.54	-0.2
5,507,438	+		CA265_RS22445	0.62	+0.1
5,507,439	-		CA265_RS22445	0.62	+0.6
5,507,439	-		CA265_RS22445	0.62	+0.0
5,507,443	-		CA265_RS22445	0.63	-0.3
5,507,547	-		CA265_RS22445	0.75	-0.1
5,507,646	-		CA265_RS22445	0.87	-0.1
5,507,666	-		CA265_RS22445	0.89	+0.6
5,507,671	-		CA265_RS22445	0.90	+0.2
5,507,695	-				+0.0
5,507,712	+				-0.2
5,507,737	-				+0.4
5,507,759	+				+0.1
5,507,826	+				-0.2
5,507,839	-		CA265_RS22450	0.21	-0.5
5,507,901	+		CA265_RS22450	0.37	-1.5
5,507,902	-		CA265_RS22450	0.38	-2.2
5,507,902	-		CA265_RS22450	0.38	-0.8
5,507,905	+		CA265_RS22450	0.38	-0.5
5,508,089	+		CA265_RS22450	0.87	-0.8
5,508,098	-				-0.1
5,508,107	+				-0.2
5,508,107	+				-0.2
5,508,110	-				-1.9
5,508,139	+				-0.8
5,508,139	+				+0.1
5,508,142	-				+0.6
5,508,183	-				-0.2
5,508,188	-				-0.8
5,508,199	-				+0.8
5,508,201	+				+0.3
5,508,268	-		CA265_RS22455	0.14	+0.0
5,508,270	+		CA265_RS22455	0.14	-0.0
5,508,272	+		CA265_RS22455	0.15	-0.0
5,508,273	-		CA265_RS22455	0.15	+0.3
5,508,371	+		CA265_RS22455	0.27	-0.3
5,508,497	-		CA265_RS22455	0.42	-0.6
5,508,497	-		CA265_RS22455	0.42	-1.1
5,508,518	+		CA265_RS22455	0.45	+0.1
5,508,581	-		CA265_RS22455	0.53	-1.5
5,508,600	-		CA265_RS22455	0.55	-0.5
5,508,618	+		CA265_RS22455	0.57	+1.2
5,508,625	-		CA265_RS22455	0.58	+1.4
5,508,674	-		CA265_RS22455	0.64	+0.8
5,508,711	+				+1.8
5,508,743	-		CA265_RS22455	0.72	+0.0
5,508,743	-		CA265_RS22455	0.72	+0.3
5,508,826	-		CA265_RS22455	0.83	+0.3
5,508,861	+		CA265_RS22455	0.87	-0.5
5,508,866	-		CA265_RS22455	0.88	-0.1
5,508,874	+		CA265_RS22455	0.89	-0.3
5,508,874	+		CA265_RS22455	0.89	+0.6
5,508,948	+				+0.5
5,508,952	-				+0.2
5,508,952	-				-0.8
5,508,971	+				-0.3
5,508,980	-				-0.0
5,509,079	+		CA265_RS22460	0.13	+0.2
5,509,079	+		CA265_RS22460	0.13	-0.2